Detailed information NTG0259340

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JSMCR1_RS05175
• Genome accession: NZ_CP030152
• Coordinates: 1087056..1088048 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain JSMCR1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1082056..1093048

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JSMCR1_RS05145 (JSMCR1_1046)	ispD	1082165..1082875 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JSMCR1_RS05150 (JSMCR1_1047)	ispF	1082875..1083354 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JSMCR1_RS05155 (JSMCR1_1048)	truD	1083351..1084400 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
JSMCR1_RS05160 (JSMCR1_1049)	surE	1084381..1085142 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JSMCR1_RS05165 (JSMCR1_1050)	pcm	1085136..1085762 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JSMCR1_RS05170 (JSMCR1_1051)	nlpD	1085947..1086993 (+)	1047	WP_306308696.1	murein hydrolase activator NlpD	-
JSMCR1_RS05175 (JSMCR1_1052)	rpoS	1087056..1088048 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JSMCR1_RS05180 (JSMCR1_1053)	ygbN	1088142..1089506 (-)	1365	WP_000104441.1	GntP family transporter	-
JSMCR1_RS05185 (JSMCR1_1054)	ygbM	1089595..1090371 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
JSMCR1_RS05190 (JSMCR1_1055)	ygbL	1090376..1091014 (-)	639	WP_001278994.1	aldolase	-
JSMCR1_RS05195 (JSMCR1_1056)	otnK	1091011..1092273 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=259340 JSMCR1_RS05175 WP_000081550.1 1087056..1088048(+) (rpoS) [Escherichia coli strain JSMCR1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=259340 JSMCR1_RS05175 WP_000081550.1 1087056..1088048(+) (rpoS) [Escherichia coli strain JSMCR1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715