Detailed information NTG0259285

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: DOP62_RS06290
• Genome accession: NZ_CP030139
• Coordinates: 1314336..1315568 (-)
• Length: 410 a.a.
• NCBI ID: WP_208676347.1
• Uniprot ID: -
• Organism: Synechococcus elongatus PCC 11801
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1309336..1320568

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DOP62_RS06270 (DOP62_05630)	rfbC	1310444..1310995 (-)	552	WP_208676353.1	dTDP-4-dehydrorhamnose 3,5-epimerase	-
DOP62_RS06275 (DOP62_05625)	dusA	1311522..1312535 (-)	1014	WP_208676897.1	tRNA dihydrouridine(20/20a) synthase DusA	-
DOP62_RS06280 (DOP62_05620)	-	1312562..1313794 (+)	1233	WP_208676351.1	NAD(P)/FAD-dependent oxidoreductase	-
DOP62_RS06285 (DOP62_05615)	-	1313774..1314331 (-)	558	WP_208676349.1	hypothetical protein	-
DOP62_RS06290 (DOP62_05610)	pilC	1314336..1315568 (-)	1233	WP_208676347.1	type II secretion system F family protein	Machinery gene
DOP62_RS06295 (DOP62_05605)	pilT	1315592..1316680 (-)	1089	WP_208676345.1	type IV pilus twitching motility protein PilT	Machinery gene
DOP62_RS06300 (DOP62_05600)	pilB/pilB1	1316752..1318752 (-)	2001	WP_208676343.1	GspE/PulE family protein	Machinery gene
DOP62_RS06305 (DOP62_05595)	grpE	1319038..1319661 (+)	624	WP_338462949.1	nucleotide exchange factor GrpE	-

Sequence

Protein

• Length: 410 a.a.
• Molecular weight: 45218.21 Da
• Isoelectric Point: 5.2885

>NTDB_id=259285 DOP62_RS06290 WP_208676347.1 1314336..1315568(-) (pilC) [Synechococcus elongatus PCC 11801]
MPTFVAQVRDSHGAVRELRIRSGNVRQARVELRQMGLVIQTIDESVGFSLANLSSFNLEEATSKVTVKDMALFSRQLSSL
VDAGVPIVRALGLLTEQTRNPKLRKALRQINLDVQEGLNLSDSMRKFPNIFDGLYVAMIQAGETGGVLDDVLNRLSKLLE
DMSRLRNQMKSAMTYPMAVFVIAILVFLGMTIFIIPTFAGIFEDQGAELPGFTLFLLSISETLRTPIFWGLFLVFLFGSI
FVFKQYYATPLGCLSVDSMILRLPILGEMIQKAATARFCRTFGSLTRAGVPIMTALEIVRDTAGNQAIAQSIDAARMEVQ
TGGMMSVALARYRIFPMMALSMITIGEETGELDTMVNKVADFYEDEVEQAVKGLTSLLEPIMIVLVGGIVGSILLAMYLP
MFSIFDQIKG

Nucleotide

• Length: 1233 bp

>NTDB_id=259285 DOP62_RS06290 WP_208676347.1 1314336..1315568(-) (pilC) [Synechococcus elongatus PCC 11801]
ATGCCAACTTTTGTTGCTCAAGTTCGTGACAGCCATGGTGCTGTCCGTGAACTGCGCATTCGATCTGGAAACGTTCGTCA
AGCGCGTGTTGAGCTGCGCCAGATGGGCTTGGTTATCCAAACCATTGATGAGTCAGTCGGATTCTCTCTCGCTAATCTCA
GTAGCTTCAATTTGGAAGAGGCGACAAGTAAAGTTACGGTAAAAGATATGGCTTTGTTTTCTCGCCAGCTATCTTCACTG
GTAGACGCAGGTGTTCCGATCGTCAGAGCCTTAGGGCTGCTAACAGAGCAAACCCGTAACCCTAAGCTTAGAAAAGCACT
CAGACAGATTAATCTTGATGTCCAAGAAGGTCTGAATCTTTCAGATTCAATGCGTAAGTTCCCTAATATCTTTGATGGTT
TATACGTTGCTATGATTCAAGCTGGCGAAACGGGGGGGGTGTTGGATGATGTTTTAAACCGGCTTTCTAAACTACTGGAA
GATATGTCTCGGCTTCGCAACCAGATGAAATCGGCGATGACCTATCCAATGGCAGTTTTTGTTATTGCCATTCTTGTTTT
TCTAGGTATGACAATTTTTATCATTCCTACATTCGCAGGAATTTTTGAAGATCAAGGTGCAGAGCTTCCAGGCTTTACAT
TATTTCTATTATCGATTAGTGAGACGTTAAGGACACCAATTTTTTGGGGACTGTTCCTGGTCTTTTTATTTGGTTCTATT
TTTGTCTTTAAACAGTATTATGCAACTCCACTTGGGTGTCTCAGTGTAGACAGTATGATTTTGCGTCTGCCTATCTTGGG
AGAAATGATTCAGAAGGCAGCAACAGCTCGCTTTTGTCGAACTTTTGGCTCGCTGACACGGGCAGGGGTTCCTATCATGA
CTGCGCTCGAAATTGTACGAGATACCGCAGGTAATCAAGCGATCGCCCAATCAATTGATGCTGCCCGAATGGAAGTGCAA
ACTGGTGGGATGATGAGCGTGGCTCTAGCACGCTATCGAATCTTTCCAATGATGGCCTTGAGTATGATTACGATTGGAGA
GGAGACGGGTGAGCTAGACACAATGGTCAATAAAGTTGCCGACTTTTATGAAGATGAGGTCGAGCAAGCTGTTAAGGGTC
TGACAAGTCTGTTGGAGCCAATTATGATTGTTCTAGTCGGCGGTATTGTTGGCTCAATCTTGCTCGCGATGTATTTGCCA
ATGTTTAGCATCTTTGATCAGATCAAAGGGTAA

Domains

Predicted by InterProScan.

• Type II secretion system (T2SS), protein F (T2SSF) (73-196)

• Type II secretion system (T2SS), protein F (T2SSF) (278-400)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	41.728	98.78	0.412