Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   DOP62_RS02435 Genome accession   NZ_CP030139
Coordinates   519767..520699 (-) Length   310 a.a.
NCBI ID   WP_338430634.1    Uniprot ID   -
Organism   Synechococcus elongatus PCC 11801     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 514767..525699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOP62_RS02425 (DOP62_08200) rodA 515158..516423 (+) 1266 WP_208672871.1 rod shape-determining protein RodA -
  DOP62_RS02430 (DOP62_08195) - 516450..519572 (-) 3123 WP_208672870.1 DUF3427 domain-containing protein -
  DOP62_RS02435 (DOP62_08190) rpoS 519767..520699 (-) 933 WP_338430634.1 RpoD/SigA family RNA polymerase sigma factor Regulator
  DOP62_RS02440 (DOP62_13540) - 520868..521065 (+) 198 WP_370538849.1 hypothetical protein -
  DOP62_RS02445 (DOP62_08185) - 521532..521984 (+) 453 WP_208672868.1 peroxiredoxin -
  DOP62_RS02450 (DOP62_08180) - 522119..522694 (-) 576 WP_370538850.1 hypothetical protein -
  DOP62_RS02455 (DOP62_08175) - 522776..523135 (+) 360 WP_261789778.1 DUF565 domain-containing protein -
  DOP62_RS02460 (DOP62_08170) - 523140..524168 (+) 1029 WP_261789777.1 hypothetical protein -
  DOP62_RS02465 (DOP62_08165) rpmF 524182..524358 (-) 177 WP_208672867.1 50S ribosomal protein L32 -

Sequence

Protein


Download         Length: 310 a.a.        Molecular weight: 35170.38 Da        Isoelectric Point: 9.6197

>NTDB_id=259271 DOP62_RS02435 WP_338430634.1 519767..520699(-) (rpoS) [Synechococcus elongatus PCC 11801]
MASASAHAVATAQRRTRDNVSWYLSSIGRIPLLTADQEIELGQKVQVMMNLLEDASSDRSFTEAETAAIQLGQRAKERMI
KANLRLVVSVAKKYQGKGLEFLDLIQEGALGLERAVEKFDPSKGYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLTERL
SQIRKVTRELAHELGRLPSRQEIAEAVQLPLQDLETILRQSRQCTSLDAPVSGDDGKSFLGELIADPNGSEPMDLMESAM
QREQLDAWLEHLTPQERQVLYLRFGLGDGERHTLAEIGRMMEVSRERVRQVEVKALRKLRNLTKRSRIAV

Nucleotide


Download         Length: 933 bp        

>NTDB_id=259271 DOP62_RS02435 WP_338430634.1 519767..520699(-) (rpoS) [Synechococcus elongatus PCC 11801]
ATGGCAAGTGCTTCGGCCCATGCTGTCGCGACGGCTCAGCGACGAACAAGAGATAACGTGAGCTGGTACCTCAGCTCTAT
TGGTCGAATTCCGCTGCTCACTGCAGATCAGGAAATCGAGTTGGGTCAGAAAGTGCAGGTGATGATGAACCTGCTTGAAG
ACGCTTCCAGCGATCGCTCTTTTACCGAGGCAGAGACCGCAGCGATTCAGCTCGGGCAACGCGCCAAAGAGCGAATGATC
AAGGCAAACCTGCGTCTTGTCGTCTCGGTCGCAAAGAAATACCAGGGTAAGGGTCTCGAGTTTCTCGACCTCATCCAAGA
AGGTGCCTTGGGTCTTGAGCGCGCTGTCGAGAAATTCGATCCTTCCAAGGGCTATAAATTCTCGACCTACGCTTTCTGGT
GGATTCGCCAGAGCATGACACGGGCGATCGCCTGCCAATCTCGTACGATTCGCCTACCCGTTCACTTAACTGAACGGCTG
AGTCAAATTCGCAAGGTCACCCGCGAGCTGGCCCATGAGCTTGGCCGTCTGCCCTCGCGCCAAGAAATTGCCGAAGCAGT
GCAGCTGCCGCTCCAAGACCTCGAAACGATTTTGCGCCAGTCGCGCCAGTGCACCAGCTTGGATGCTCCGGTCAGCGGCG
ACGACGGCAAGAGCTTCTTGGGTGAATTGATTGCCGATCCCAACGGCAGTGAACCCATGGATCTCATGGAAAGTGCGATG
CAGCGCGAGCAGCTCGATGCTTGGCTCGAGCATCTGACCCCCCAAGAGCGCCAGGTGCTCTATCTCCGCTTTGGTCTGGG
TGATGGCGAGCGGCACACCTTGGCAGAGATCGGTCGAATGATGGAGGTCTCGCGGGAGCGCGTCCGGCAGGTAGAAGTCA
AAGCCCTACGAAAACTGCGCAACTTGACCAAGCGATCGCGGATTGCTGTCTGA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(248-301)

Sigma-70 region 3 (Sigma70_r3)

(158-234)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(18-48)

Sigma-70 region 2 (Sigma70_r2)

(79-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39.535

97.097

0.384