Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   DOP62_RS02405 Genome accession   NZ_CP030139
Coordinates   509233..512007 (+) Length   924 a.a.
NCBI ID   WP_208672874.1    Uniprot ID   -
Organism   Synechococcus elongatus PCC 11801     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 504233..517007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOP62_RS02380 (DOP62_08240) - 504470..505084 (-) 615 WP_208672881.1 hypothetical protein -
  DOP62_RS02385 (DOP62_08235) - 505205..505966 (+) 762 WP_208672880.1 YebC/PmpR family DNA-binding transcriptional regulator -
  DOP62_RS02390 (DOP62_13535) - 505990..506166 (+) 177 WP_208672878.1 hypothetical protein -
  DOP62_RS02395 (DOP62_08230) - 506215..506697 (+) 483 WP_208672876.1 chemotaxis protein CheW -
  DOP62_RS02400 (DOP62_08225) - 506717..509230 (+) 2514 WP_208672875.1 methyl-accepting chemotaxis protein -
  DOP62_RS02405 (DOP62_08220) pilL-C 509233..512007 (+) 2775 WP_208672874.1 hybrid sensor histidine kinase/response regulator Machinery gene
  DOP62_RS02410 (DOP62_08215) - 512011..512247 (+) 237 WP_208677661.1 hypothetical protein -
  DOP62_RS02415 (DOP62_08210) - 512534..513910 (+) 1377 WP_208672872.1 glycosyltransferase family 2 protein -
  DOP62_RS02420 (DOP62_08205) - 514041..515108 (+) 1068 WP_370538848.1 Mrp/NBP35 family ATP-binding protein -
  DOP62_RS02425 (DOP62_08200) rodA 515158..516423 (+) 1266 WP_208672871.1 rod shape-determining protein RodA -

Sequence

Protein


Download         Length: 924 a.a.        Molecular weight: 102462.34 Da        Isoelectric Point: 4.3741

>NTDB_id=259270 DOP62_RS02405 WP_208672874.1 509233..512007(+) (pilL-C) [Synechococcus elongatus PCC 11801]
MSPTSDNVLRSLFLRETRENLQLLSSTLSQLEAGLPEATTLADASRAAHSLKGAAALLKFETFRQLAAGLESCLSLLAEA
ELPDYAASLPLFQQTTTLLVTATDRIEADADDLGLLPDEGQHLVEQLTRLQGTLETALHTPVDQQEVVENTLEDLLSQDF
EPVLPPADPSLDETLDALLGDLEELGKPADSDDDRPPLEELNFDLEDWIEASEEASQAAEVDVAAQLKVLEAAIADLTQQ
SQEQPLTLGIDPAVLSAVIQAPPRLPVTLTLEPVTKARSQDRGPVAFEQTLRVPVRQLDNLSNLVGEIVVSRNTLESDQS
HLRETLENLMLQVHQLGDLGERMRELYERSLLETALAARRQLVGAPSAVATSNLSTFPTDQFDDLELDRFSGFHSISQEM
MELLVRLREAASDIDFMVNEPFDQLTRNFQQITLQLQSELNQTRMVPFSDLTDQLPRAVREISRRCGKGAHLEIEGQDIL
IDKMILQKLQAPMTHLINNALSHGIETAEVRQYRNKSPEGTLVVRASLQGNRTLITVSDDGAGIDAEQVKIKALSRGLIT
PEEAAGMRVREIYELLFRPGFSTRDQADELAGRGVGLDVVRRALHEIQGEIVVDSELGKGTTFTFRLPLTLSITKALTCL
HERARLAFPMDSVEEMLDIPQQRLSMGPQGQLALDWHNQSLPVFPLSSLLNFYLPFGRTRYYNNLGDDGVVSIVILRNDN
EYLAVQTDQIEGEREIVIKQIEGPIAKPLGILGVTVRSDGQVMPIVDVLELFDIAYGRVRQRQTAPTPPSSDELNTATEP
MVLIVDDSITVRELLSMTFKKAGYIVEQARNGQEALEKLYSGLPCDLVFCDIEMPKMNGLELLERLQADPKLRRLPVAML
TSRGADRHRQIAAHLGARAYFSKPYLEEQLLEASARLRNGERLI

Nucleotide


Download         Length: 2775 bp        

>NTDB_id=259270 DOP62_RS02405 WP_208672874.1 509233..512007(+) (pilL-C) [Synechococcus elongatus PCC 11801]
ATGTCACCCACCAGTGATAATGTCCTGCGATCGCTGTTTCTCCGAGAAACGCGGGAGAATTTACAGCTTCTCAGCAGCAC
TCTCAGCCAGCTCGAAGCAGGCCTCCCAGAAGCGACCACGCTGGCGGACGCATCTCGGGCGGCTCACTCGCTCAAGGGTG
CAGCGGCTTTGCTTAAGTTCGAAACCTTCCGACAGCTCGCAGCAGGTCTGGAATCTTGTCTATCGCTTCTCGCCGAGGCA
GAGCTACCGGACTACGCTGCCAGTCTGCCCCTGTTTCAGCAGACAACGACCCTGCTCGTGACCGCCACTGATCGGATCGA
GGCGGACGCTGATGATCTCGGCTTGCTGCCTGATGAAGGGCAGCACTTGGTCGAACAGTTGACCCGGCTGCAAGGAACGC
TGGAAACCGCTCTTCACACGCCTGTCGATCAGCAGGAAGTGGTTGAAAACACCCTTGAAGATTTACTCAGTCAAGACTTT
GAGCCTGTCTTGCCACCTGCCGATCCCAGTTTGGATGAGACGCTGGATGCCTTGCTCGGCGATCTCGAAGAACTCGGGAA
GCCTGCTGACTCCGACGACGATCGCCCACCGCTGGAAGAACTTAACTTTGACCTTGAAGACTGGATTGAGGCCAGTGAAG
AAGCATCGCAGGCAGCTGAAGTAGACGTTGCCGCCCAGCTCAAAGTTCTAGAAGCCGCGATCGCCGATCTGACACAACAG
TCCCAAGAGCAACCCCTGACGCTGGGGATCGATCCCGCCGTCTTGAGTGCTGTCATTCAAGCCCCACCACGGCTACCTGT
AACGTTGACCCTAGAGCCCGTCACCAAAGCCCGCAGCCAGGATCGAGGCCCTGTGGCCTTCGAGCAGACGTTGCGGGTCC
CCGTACGGCAATTGGATAACCTCAGTAACCTGGTTGGGGAAATCGTTGTCAGCCGGAATACCCTCGAAAGCGACCAATCC
CACCTGCGGGAAACCCTCGAGAACCTGATGCTGCAGGTGCATCAGCTAGGGGATCTGGGTGAGCGGATGCGGGAACTGTA
CGAGCGATCGCTGCTGGAAACCGCACTGGCGGCTCGCCGGCAACTGGTCGGAGCCCCTAGCGCCGTCGCAACGAGTAATC
TTTCCACCTTCCCCACTGATCAGTTCGACGATCTAGAACTCGATCGCTTCAGTGGTTTCCACTCCATCTCCCAAGAAATG
ATGGAGTTGCTGGTGCGGTTGCGCGAGGCGGCCTCAGACATTGACTTCATGGTCAATGAACCGTTTGACCAACTGACCCG
CAACTTCCAGCAAATTACTCTGCAACTGCAGAGCGAGCTGAACCAGACGCGCATGGTCCCCTTCTCGGACCTCACCGACC
AGCTCCCGCGTGCCGTTCGGGAGATTTCGCGCCGCTGCGGTAAAGGGGCTCACCTCGAGATTGAGGGGCAAGACATCTTG
ATTGACAAGATGATCCTGCAAAAACTGCAGGCGCCCATGACCCACTTGATTAACAACGCCCTCAGTCATGGCATTGAAAC
TGCAGAAGTGCGGCAATACCGCAATAAATCCCCGGAGGGAACGCTGGTAGTTCGGGCTTCGCTGCAGGGCAACCGGACCC
TGATTACCGTCAGTGACGACGGGGCAGGCATTGATGCGGAGCAGGTGAAGATCAAAGCTCTCTCACGGGGTCTGATTACC
CCAGAAGAAGCCGCAGGCATGCGCGTGCGGGAGATTTACGAACTCCTGTTCCGTCCGGGCTTTAGTACCCGCGACCAAGC
TGATGAGCTCGCTGGACGCGGGGTTGGCTTGGATGTAGTGCGGCGAGCGCTGCATGAAATTCAAGGCGAGATTGTGGTCG
ATTCGGAGCTGGGTAAAGGAACGACCTTTACCTTCCGACTACCCTTGACGCTCTCGATTACCAAAGCCTTGACCTGTCTA
CACGAGCGGGCACGGCTGGCCTTCCCGATGGACAGCGTCGAGGAGATGCTCGACATTCCTCAGCAACGCCTCTCGATGGG
GCCGCAAGGCCAACTAGCGTTGGACTGGCACAATCAATCGCTGCCAGTGTTTCCACTCTCATCACTGCTGAATTTCTACC
TGCCATTCGGGCGCACTCGCTACTACAACAATCTGGGTGATGACGGCGTGGTGTCGATTGTCATCCTGCGCAATGACAAC
GAGTACCTCGCCGTTCAGACCGATCAGATTGAGGGCGAGCGTGAAATTGTGATCAAGCAGATCGAAGGTCCGATCGCCAA
ACCCCTCGGCATTCTGGGGGTCACGGTTCGCTCCGACGGTCAGGTGATGCCAATTGTCGACGTCTTGGAACTGTTTGACA
TCGCCTATGGACGGGTGCGGCAGCGCCAGACAGCTCCAACGCCACCCAGTTCTGATGAACTCAACACCGCGACCGAACCC
ATGGTGCTGATTGTCGATGACTCGATCACCGTCCGCGAACTGCTGTCGATGACCTTCAAGAAGGCAGGCTACATCGTCGA
GCAGGCGCGCAATGGTCAAGAGGCCCTTGAAAAACTCTATTCGGGACTGCCCTGCGATCTGGTCTTCTGCGATATCGAGA
TGCCGAAGATGAATGGCCTAGAGCTCTTGGAGCGCCTGCAGGCGGACCCCAAACTGCGGCGGTTACCAGTGGCTATGCTG
ACATCGCGAGGTGCCGATCGCCATCGACAGATCGCGGCTCACTTGGGGGCACGGGCCTACTTCTCCAAGCCCTACCTCGA
GGAGCAACTGTTGGAGGCATCAGCACGCCTGAGAAACGGCGAACGGCTGATTTAG

Domains

Predicted by InterProScan.

CheW-like domain (CheW)

(637-773)

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(289-358)

Hpt domain (Hpt)

(9-95)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(492-630)

Response regulator receiver domain (Response_reg)

(802-913)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

56.098

70.996

0.398