Detailed information
Bioinformatically predicted
Overview
| Name | rpoS | Type | Regulator |
| Locus tag | DOP62_RS00710 | Genome accession | NZ_CP030139 |
| Coordinates | 135230..136192 (+) | Length | 320 a.a. |
| NCBI ID | WP_208673751.1 | Uniprot ID | - |
| Organism | Synechococcus elongatus PCC 11801 | ||
| Function | regulation of chitinases (predicted from homology) Competence regulation |
||
Genomic Context
Location: 130230..141192
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DOP62_RS00670 (DOP62_13430) | - | 130250..130402 (+) | 153 | WP_208673737.1 | hypothetical protein | - |
| DOP62_RS00675 (DOP62_11110) | - | 130393..130878 (+) | 486 | WP_208673739.1 | GNAT family N-acetyltransferase | - |
| DOP62_RS00680 (DOP62_11115) | - | 130969..131721 (+) | 753 | WP_208673742.1 | HEAT repeat domain-containing protein | - |
| DOP62_RS00685 (DOP62_11120) | - | 132013..132216 (+) | 204 | WP_208673744.1 | DUF2997 domain-containing protein | - |
| DOP62_RS00690 (DOP62_11125) | - | 132259..132645 (+) | 387 | WP_011378170.1 | DUF1257 domain-containing protein | - |
| DOP62_RS00695 (DOP62_11130) | - | 132648..133037 (+) | 390 | WP_208673745.1 | ferredoxin | - |
| DOP62_RS00700 (DOP62_11135) | - | 133040..133801 (+) | 762 | WP_208673747.1 | class I SAM-dependent methyltransferase | - |
| DOP62_RS00705 (DOP62_11140) | - | 133829..135013 (+) | 1185 | WP_208673749.1 | aldo/keto reductase | - |
| DOP62_RS00710 (DOP62_11145) | rpoS | 135230..136192 (+) | 963 | WP_208673751.1 | RpoD/SigA family RNA polymerase sigma factor | Regulator |
| DOP62_RS00715 (DOP62_11150) | - | 136391..136936 (+) | 546 | WP_261789829.1 | HPP family protein | - |
| DOP62_RS00720 (DOP62_11155) | - | 137105..137857 (+) | 753 | WP_208673753.1 | hypothetical protein | - |
| DOP62_RS00725 (DOP62_11160) | - | 138006..138578 (+) | 573 | WP_208673756.1 | metal-binding protein | - |
| DOP62_RS00730 (DOP62_11165) | mazG | 138584..139423 (+) | 840 | WP_208677062.1 | nucleoside triphosphate pyrophosphohydrolase | - |
| DOP62_RS00735 (DOP62_11170) | - | 139449..140162 (-) | 714 | WP_208673758.1 | DUF3153 domain-containing protein | - |
| DOP62_RS00740 (DOP62_11175) | - | 140190..140717 (-) | 528 | WP_208673760.1 | tetratricopeptide repeat protein | - |
Sequence
Protein
Download Length: 320 a.a. Molecular weight: 37136.25 Da Isoelectric Point: 6.9008
>NTDB_id=259267 DOP62_RS00710 WP_208673751.1 135230..136192(+) (rpoS) [Synechococcus elongatus PCC 11801]
MSTSSTAYSPDLVRAYLQEIGRVRLLTAEEELRYGRQVQRLMTLLDIQAELRDRLGHEPSKEEWAAAVELDLEDLDRQVE
QGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFDPSKGYKFSTYAYWWIRQAITRAIAQQSRTI
RLPIHITEKLNKLKKTQRELSQQLGRSATASELAEVLELPLEQVREYIQMNRQPVSLDVKVGDSQDTELQELLEDEQSSP
SDYVEQESLRRDLRTLMAELTPQQQAVIALRYGLDEGDSLSLAKVGERLNISRERVRKLERQAMDHLRRRSRLLAEYAAS
MSTSSTAYSPDLVRAYLQEIGRVRLLTAEEELRYGRQVQRLMTLLDIQAELRDRLGHEPSKEEWAAAVELDLEDLDRQVE
QGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFDPSKGYKFSTYAYWWIRQAITRAIAQQSRTI
RLPIHITEKLNKLKKTQRELSQQLGRSATASELAEVLELPLEQVREYIQMNRQPVSLDVKVGDSQDTELQELLEDEQSSP
SDYVEQESLRRDLRTLMAELTPQQQAVIALRYGLDEGDSLSLAKVGERLNISRERVRKLERQAMDHLRRRSRLLAEYAAS
Nucleotide
Download Length: 963 bp
>NTDB_id=259267 DOP62_RS00710 WP_208673751.1 135230..136192(+) (rpoS) [Synechococcus elongatus PCC 11801]
ATGTCTACCTCCTCTACCGCCTATAGTCCTGATTTAGTCCGTGCCTACCTGCAAGAGATTGGTCGGGTACGACTGCTCAC
CGCTGAGGAAGAGCTGCGCTACGGTCGGCAAGTCCAGCGCCTCATGACCCTTTTGGATATCCAAGCCGAGCTGCGCGATC
GCCTAGGCCACGAGCCGAGTAAAGAAGAGTGGGCGGCAGCCGTTGAACTTGATCTTGAGGATCTCGATCGCCAAGTTGAG
CAAGGTCAGCGGGCGAAACGCAAAATGATCGAGGCTAACTTGCGCCTTGTTGTTTCGATCGCAAAAAAATACCAGAAGCG
TCACATGGAATTCTTGGATCTCATCCAAGAAGGCACGCTAGGCCTCGAGCGCGGTGTCGAGAAATTCGACCCCTCCAAGG
GTTACAAATTCTCGACCTATGCCTACTGGTGGATTCGCCAAGCCATTACTCGGGCGATCGCTCAGCAATCCCGAACGATT
CGCCTGCCGATCCACATCACTGAAAAGCTGAACAAGCTCAAAAAAACTCAGCGTGAGCTTTCGCAGCAATTGGGTCGTAG
CGCTACAGCGTCCGAGTTGGCGGAAGTGCTGGAATTACCGCTCGAGCAGGTGCGGGAATACATCCAAATGAACCGCCAGC
CTGTGTCGCTCGATGTCAAAGTCGGCGATAGCCAAGATACGGAATTGCAGGAACTGTTGGAAGACGAACAGTCATCTCCC
TCGGACTACGTTGAACAGGAGTCACTGCGTCGTGATCTCCGTACCTTGATGGCGGAACTGACACCGCAGCAGCAGGCGGT
CATTGCTCTGCGCTACGGCTTGGATGAAGGTGATAGCCTTTCCTTGGCCAAAGTCGGTGAACGTCTCAATATCAGTCGTG
AGCGCGTCCGGAAACTTGAGCGTCAAGCCATGGATCATCTGCGCCGCCGCAGTCGCCTCTTGGCAGAATATGCTGCTAGC
TAG
ATGTCTACCTCCTCTACCGCCTATAGTCCTGATTTAGTCCGTGCCTACCTGCAAGAGATTGGTCGGGTACGACTGCTCAC
CGCTGAGGAAGAGCTGCGCTACGGTCGGCAAGTCCAGCGCCTCATGACCCTTTTGGATATCCAAGCCGAGCTGCGCGATC
GCCTAGGCCACGAGCCGAGTAAAGAAGAGTGGGCGGCAGCCGTTGAACTTGATCTTGAGGATCTCGATCGCCAAGTTGAG
CAAGGTCAGCGGGCGAAACGCAAAATGATCGAGGCTAACTTGCGCCTTGTTGTTTCGATCGCAAAAAAATACCAGAAGCG
TCACATGGAATTCTTGGATCTCATCCAAGAAGGCACGCTAGGCCTCGAGCGCGGTGTCGAGAAATTCGACCCCTCCAAGG
GTTACAAATTCTCGACCTATGCCTACTGGTGGATTCGCCAAGCCATTACTCGGGCGATCGCTCAGCAATCCCGAACGATT
CGCCTGCCGATCCACATCACTGAAAAGCTGAACAAGCTCAAAAAAACTCAGCGTGAGCTTTCGCAGCAATTGGGTCGTAG
CGCTACAGCGTCCGAGTTGGCGGAAGTGCTGGAATTACCGCTCGAGCAGGTGCGGGAATACATCCAAATGAACCGCCAGC
CTGTGTCGCTCGATGTCAAAGTCGGCGATAGCCAAGATACGGAATTGCAGGAACTGTTGGAAGACGAACAGTCATCTCCC
TCGGACTACGTTGAACAGGAGTCACTGCGTCGTGATCTCCGTACCTTGATGGCGGAACTGACACCGCAGCAGCAGGCGGT
CATTGCTCTGCGCTACGGCTTGGATGAAGGTGATAGCCTTTCCTTGGCCAAAGTCGGTGAACGTCTCAATATCAGTCGTG
AGCGCGTCCGGAAACTTGAGCGTCAAGCCATGGATCATCTGCGCCGCCGCAGTCGCCTCTTGGCAGAATATGCTGCTAGC
TAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rpoS | Vibrio cholerae O1 biovar El Tor strain E7946 |
38.689 |
95.313 |
0.369 |