Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C2G36_RS12905 Genome accession   NZ_CP030138
Coordinates   2412194..2412664 (+) Length   156 a.a.
NCBI ID   WP_000164421.1    Uniprot ID   P65329
Organism   Staphylococcus aureus strain M48     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2407194..2417664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2G36_RS12885 (C2G36_12885) coaW 2407503..2408306 (+) 804 WP_000862727.1 type II pantothenate kinase -
  C2G36_RS12890 (C2G36_12890) - 2408436..2409107 (-) 672 WP_000120549.1 DUF2750 domain-containing protein -
  C2G36_RS12895 (C2G36_12895) - 2409506..2410699 (-) 1194 WP_000183726.1 hypothetical protein -
  C2G36_RS12900 (C2G36_12900) - 2410699..2411883 (-) 1185 WP_001291500.1 M20 family metallopeptidase -
  C2G36_RS12905 (C2G36_12905) luxS 2412194..2412664 (+) 471 WP_000164421.1 S-ribosylhomocysteine lyase Regulator
  C2G36_RS12910 (C2G36_12910) - 2412816..2413166 (-) 351 WP_001024035.1 membrane protein -
  C2G36_RS12915 (C2G36_12915) - 2413180..2414481 (-) 1302 WP_001242320.1 pyrimidine-nucleoside phosphorylase -
  C2G36_RS12925 (C2G36_12925) deoC 2414760..2415275 (-) 516 Protein_2400 deoxyribose-phosphate aldolase -
  C2G36_RS12930 (C2G36_12930) deoC 2415278..2415577 (-) 300 Protein_2401 deoxyribose-phosphate aldolase -
  C2G36_RS12935 (C2G36_12935) deoD 2415867..2416547 (+) 681 WP_129367424.1 purine-nucleoside phosphorylase -
  C2G36_RS12940 (C2G36_12940) - 2416668..2417111 (-) 444 WP_000070866.1 Dps family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17513.76 Da        Isoelectric Point: 5.4567

>NTDB_id=259258 C2G36_RS12905 WP_000164421.1 2412194..2412664(+) (luxS) [Staphylococcus aureus strain M48]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLNATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=259258 C2G36_RS12905 WP_000164421.1 2412194..2412664(+) (luxS) [Staphylococcus aureus strain M48]
ATGACAAAAATGAATGTTGAAAGTTTCAATTTAGATCATACTAAGGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTCACAAATACGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCCG
GACTACATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTTGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTATTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAATGCTACTGAAGTGCCTGCTTGTAATGAAGTACAATGTGGCTGGGCAGCAAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(5-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65329

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

44.681

90.385

0.404