Detailed information NTG0259223

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: CXG95_RS20260
• Genome accession: NZ_CP025226
• Coordinates: 3880339..3881451 (-)
• Length: 370 a.a.
• NCBI ID: WP_003178089.1
• Uniprot ID: A0A415J9T0
• Organism: Bacillus licheniformis strain PB3
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3875339..3886451

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CXG95_RS20245 (CXG95_20240)	gyrA	3875447..3877915 (-)	2469	WP_003178095.1	DNA gyrase subunit A	-
CXG95_RS20250 (CXG95_20245)	gyrB	3878106..3880019 (-)	1914	WP_009330043.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
CXG95_RS20255 (CXG95_20250)	-	3880079..3880321 (-)	243	WP_003178090.1	extracellular matrix/biofilm biosynthesis regulator RemA family protein	-
CXG95_RS20260 (CXG95_20255)	recF	3880339..3881451 (-)	1113	WP_003178089.1	DNA replication/repair protein RecF	Machinery gene
CXG95_RS20265 (CXG95_20260)	yaaA	3881468..3881683 (-)	216	WP_003178084.1	S4 domain-containing protein YaaA	-
CXG95_RS20270 (CXG95_20265)	dnaN	3881851..3882987 (-)	1137	WP_003178080.1	DNA polymerase III subunit beta	-
CXG95_RS20275 (CXG95_20270)	dnaA	3883164..3884504 (-)	1341	WP_003178077.1	chromosomal replication initiator protein DnaA	-
CXG95_RS20280 (CXG95_20275)	rpmH	3885144..3885278 (+)	135	WP_003178075.1	50S ribosomal protein L34	-
CXG95_RS20285 (CXG95_20280)	rnpA	3885363..3885722 (+)	360	WP_003178055.1	ribonuclease P protein component	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42482.33 Da
• Isoelectric Point: 6.7331

>NTDB_id=259223 CXG95_RS20260 WP_003178089.1 3880339..3881451(-) (recF) [Bacillus licheniformis strain PB3]
MYIQNLTLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGS
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHKTLNEAEIFRVENGTLSD

Nucleotide

• Length: 1113 bp

>NTDB_id=259223 CXG95_RS20260 WP_003178089.1 3880339..3881451(-) (recF) [Bacillus licheniformis strain PB3]
TTGTATATCCAAAATCTTACATTATCGTCTTACCGTAATTATGAGCGCCTTGACCTTCAATTTGAGAACAAAGTGAACGT
GATTATCGGAGAGAACGCTCAAGGAAAAACAAATTTGATGGAAGCGATCTATGTGCTTGCGATGGCGAAATCCCATCGGA
CGTCAAATGATAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTTCT
GTTCCCATTCAGCTTGTGATTTCCAAAAAAGGAAAAAAAGGTAAAGTGAATCATATTGAACAGCAGAAGCTGAGCCAGTA
TGTCGGGGCTGTCAACACGATTATGTTCGCGCCGGAGGATTTAAATCTCGTAAAAGGAAGTCCTCAGGTCAGAAGAAGGT
TTCTCGACATGGAAATCGGCCAAGTATCACCTGTCTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTTTCACAACGG
AATCATTTCTTGAAGCAGCTTCAAACGAGAAAGCAAACCGATCAAACGATGCTTGACGTGCTGACGGAACAGCTTACGGA
ATTCGCGGCAAAGGTTGTGATGAAACGGCTTCAGTTTGTCGATCAGCTTGAAAAATGGGCTCAGCCCATTCATTCCGGAA
TTTCAAGAGGTCTGGAAGAGCTGACGTTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCCGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAACGTTTTCTAAATTAAGAGATAAAGAAATAGAACGGGGGGTATCTCTTTCAGGTCCCCACAG
GGATGATGTTCTTTTCTATGTCAATGGCCGTGATGTGCAGACTTACGGATCGCAGGGCCAGCAGCGCACGACTGCATTGT
CGCTTAAATTGGCTGAAATCGACTTGATTCAGGAAGAGATAGGAGAATACCCGATTCTGCTTTTGGATGATGTTTTATCA
GAGCTGGACGACTATCGGCAGTCTCACTTGCTCCACACCATTCAAGGCCGCGTTCAAACATTCGTAACAACGACAAGCGT
TGATGGAATTGATCATAAAACCTTAAACGAAGCGGAAATCTTTCGTGTTGAAAATGGCACGCTATCGGACTGA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-346)

3D structure

• AlphaFold DB: A0A415J9T0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	89.13	99.459	0.886