Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | CXG95_RS02040 | Genome accession | NZ_CP025226 |
| Coordinates | 406128..406412 (+) | Length | 94 a.a. |
| NCBI ID | WP_003185421.1 | Uniprot ID | A0A1Y0XQV9 |
| Organism | Bacillus licheniformis strain PB3 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 401257..454730 | 406128..406412 | within | 0 |
Gene organization within MGE regions
Location: 401257..454730
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CXG95_RS02005 (CXG95_02000) | - | 401257..402396 (+) | 1140 | WP_003185439.1 | betaine/proline/choline family ABC transporter ATP-binding protein | - |
| CXG95_RS02010 (CXG95_02005) | - | 402418..403071 (+) | 654 | WP_009329612.1 | ABC transporter permease | - |
| CXG95_RS02015 (CXG95_02010) | opuCC | 403085..404002 (+) | 918 | WP_009329611.1 | osmoprotectant ABC transporter substrate-binding lipoprotein OpuCC | - |
| CXG95_RS02020 (CXG95_02015) | - | 404019..404696 (+) | 678 | WP_003185432.1 | ABC transporter permease | - |
| CXG95_RS02025 (CXG95_02020) | - | 404744..405142 (-) | 399 | WP_009329610.1 | helix-turn-helix transcriptional regulator | - |
| CXG95_RS02030 (CXG95_02025) | - | 405312..405713 (-) | 402 | WP_009329609.1 | transcriptional regulator | - |
| CXG95_RS02035 (CXG95_02030) | - | 405866..406099 (+) | 234 | WP_085959538.1 | helix-turn-helix transcriptional regulator | - |
| CXG95_RS02040 (CXG95_02035) | abrB | 406128..406412 (+) | 285 | WP_003185421.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Regulator |
| CXG95_RS02045 (CXG95_02040) | secG | 406583..406813 (+) | 231 | WP_003185418.1 | preprotein translocase subunit SecG | - |
| CXG95_RS02050 (CXG95_02045) | - | 406954..407700 (+) | 747 | WP_003185416.1 | carboxylesterase | - |
| CXG95_RS02055 (CXG95_02050) | rnr | 407714..410017 (+) | 2304 | WP_003185414.1 | ribonuclease R | - |
| CXG95_RS02060 (CXG95_02055) | smpB | 410129..410602 (+) | 474 | WP_009329604.1 | SsrA-binding protein SmpB | - |
| CXG95_RS02070 (CXG95_02065) | - | 411154..412248 (-) | 1095 | WP_003185410.1 | site-specific integrase | - |
| CXG95_RS02075 (CXG95_02070) | - | 412319..412957 (-) | 639 | WP_003185408.1 | XRE family transcriptional regulator | - |
| CXG95_RS02080 (CXG95_02075) | - | 413084..413347 (+) | 264 | WP_227592746.1 | helix-turn-helix transcriptional regulator | - |
| CXG95_RS02085 (CXG95_02080) | - | 413372..414166 (+) | 795 | WP_003185404.1 | ORF6N domain-containing protein | - |
| CXG95_RS02090 (CXG95_02085) | - | 414163..414351 (+) | 189 | WP_003185403.1 | helix-turn-helix domain-containing protein | - |
| CXG95_RS02095 (CXG95_02090) | - | 414483..414671 (+) | 189 | WP_016886536.1 | hypothetical protein | - |
| CXG95_RS02100 (CXG95_02095) | - | 414729..415283 (+) | 555 | WP_003185401.1 | hypothetical protein | - |
| CXG95_RS21735 | - | 415627..415797 (+) | 171 | WP_003185398.1 | hypothetical protein | - |
| CXG95_RS02105 (CXG95_02100) | - | 415789..416169 (-) | 381 | WP_003185396.1 | DUF2513 domain-containing protein | - |
| CXG95_RS02110 (CXG95_02105) | - | 416229..416495 (+) | 267 | WP_061565943.1 | YqaH family protein | - |
| CXG95_RS02115 (CXG95_02110) | - | 416583..416825 (+) | 243 | WP_011198322.1 | hypothetical protein | - |
| CXG95_RS02120 (CXG95_02115) | - | 416918..417475 (+) | 558 | WP_061565942.1 | host-nuclease inhibitor Gam family protein | - |
| CXG95_RS02125 (CXG95_02120) | - | 417479..418411 (+) | 933 | WP_061565941.1 | AAA family ATPase | - |
| CXG95_RS02130 (CXG95_02125) | - | 418411..418848 (+) | 438 | WP_061565940.1 | DUF669 domain-containing protein | - |
| CXG95_RS02135 (CXG95_02130) | - | 418909..421335 (+) | 2427 | WP_061565939.1 | phage/plasmid primase, P4 family | - |
| CXG95_RS02140 (CXG95_02135) | - | 421577..422014 (+) | 438 | WP_061565938.1 | hypothetical protein | - |
| CXG95_RS02145 (CXG95_02140) | - | 422011..422550 (+) | 540 | WP_020450341.1 | ERCC4 domain-containing protein | - |
| CXG95_RS02150 (CXG95_02145) | - | 422547..422717 (+) | 171 | WP_017695850.1 | Fur-regulated basic protein FbpA | - |
| CXG95_RS02155 (CXG95_02150) | - | 422721..423236 (+) | 516 | WP_009329249.1 | putative metallopeptidase | - |
| CXG95_RS02160 (CXG95_02155) | - | 423252..423647 (+) | 396 | WP_009329247.1 | YopX family protein | - |
| CXG95_RS02165 (CXG95_02160) | - | 423644..423916 (+) | 273 | WP_009329245.1 | DUF5052 family protein | - |
| CXG95_RS02170 (CXG95_02165) | - | 424043..424423 (+) | 381 | WP_009330080.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| CXG95_RS02175 (CXG95_02170) | cotD | 425173..425397 (+) | 225 | WP_003185368.1 | spore coat protein CotD | - |
| CXG95_RS02180 (CXG95_02175) | - | 425715..426947 (+) | 1233 | WP_061565937.1 | DNA-processing protein DprA | - |
| CXG95_RS02185 (CXG95_02180) | - | 426922..428166 (+) | 1245 | WP_061565936.1 | phosphoribosyltransferase family protein | - |
| CXG95_RS02195 (CXG95_02190) | - | 428572..428946 (+) | 375 | WP_061565934.1 | HNH endonuclease | - |
| CXG95_RS02205 (CXG95_02200) | - | 429176..429691 (+) | 516 | WP_003185364.1 | phage terminase small subunit P27 family | - |
| CXG95_RS02210 (CXG95_02205) | - | 429688..431397 (+) | 1710 | WP_003185362.1 | terminase TerL endonuclease subunit | - |
| CXG95_RS02215 (CXG95_02210) | - | 431409..431600 (+) | 192 | WP_003185361.1 | DUF1056 family protein | - |
| CXG95_RS02220 (CXG95_02215) | - | 431601..432911 (+) | 1311 | WP_003185359.1 | phage portal protein | - |
| CXG95_RS02225 (CXG95_02220) | - | 432856..433587 (+) | 732 | WP_061565933.1 | head maturation protease, ClpP-related | - |
| CXG95_RS02230 (CXG95_02225) | - | 433626..434909 (+) | 1284 | WP_048350601.1 | phage major capsid protein | - |
| CXG95_RS02235 (CXG95_02230) | - | 434933..435358 (+) | 426 | WP_003185353.1 | collagen-like protein | - |
| CXG95_RS02240 (CXG95_02235) | - | 435379..435681 (+) | 303 | WP_003185351.1 | head-tail connector protein | - |
| CXG95_RS02245 (CXG95_02240) | - | 435671..435979 (+) | 309 | WP_003185349.1 | phage head closure protein | - |
| CXG95_RS02250 (CXG95_02245) | - | 435979..436377 (+) | 399 | WP_003185346.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| CXG95_RS02255 (CXG95_02250) | - | 436374..436757 (+) | 384 | WP_003185344.1 | hypothetical protein | - |
| CXG95_RS02260 (CXG95_02255) | - | 436772..437389 (+) | 618 | WP_003185341.1 | major tail protein | - |
| CXG95_RS02265 (CXG95_02260) | - | 437443..437805 (+) | 363 | WP_003185339.1 | hypothetical protein | - |
| CXG95_RS02270 (CXG95_02265) | - | 438014..442486 (+) | 4473 | WP_048350600.1 | phage tail tape measure protein | - |
| CXG95_RS02275 (CXG95_02270) | - | 442486..443322 (+) | 837 | WP_003185333.1 | phage tail family protein | - |
| CXG95_RS02280 (CXG95_02275) | - | 443335..445047 (+) | 1713 | WP_003185331.1 | phage tail protein | - |
| CXG95_RS21990 | - | 445084..447129 (+) | 2046 | WP_035334112.1 | hypothetical protein | - |
| CXG95_RS02290 (CXG95_02285) | - | 447150..448487 (+) | 1338 | WP_003185328.1 | BppU family phage baseplate upper protein | - |
| CXG95_RS02295 (CXG95_02290) | - | 448500..448823 (+) | 324 | WP_003185326.1 | bZIP transcription factor | - |
| CXG95_RS02300 (CXG95_02295) | - | 448820..449005 (+) | 186 | WP_003185324.1 | XkdX family protein | - |
| CXG95_RS02305 (CXG95_02300) | - | 449068..449337 (+) | 270 | WP_003185322.1 | hemolysin XhlA family protein | - |
| CXG95_RS02310 (CXG95_02305) | - | 449353..449616 (+) | 264 | WP_003185319.1 | phage holin | - |
| CXG95_RS02315 (CXG95_02310) | - | 449664..450617 (+) | 954 | WP_061565932.1 | glycoside hydrolase family 25 protein | - |
| CXG95_RS02320 (CXG95_02315) | - | 450738..451331 (-) | 594 | WP_003185315.1 | cupin domain-containing protein | - |
| CXG95_RS02325 (CXG95_02320) | - | 451487..452338 (-) | 852 | WP_035334177.1 | ferritin family protein | - |
| CXG95_RS02330 (CXG95_02325) | - | 452546..453256 (+) | 711 | WP_003185310.1 | DUF421 domain-containing protein | - |
| CXG95_RS02335 (CXG95_02330) | - | 453664..454038 (-) | 375 | Protein_455 | YolD-like family protein | - |
| CXG95_RS02340 (CXG95_02335) | - | 454140..454730 (-) | 591 | WP_003185308.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10486.36 Da Isoelectric Point: 7.9620
>NTDB_id=259164 CXG95_RS02040 WP_003185421.1 406128..406412(+) (abrB) [Bacillus licheniformis strain PB3]
MKNTGIVRRIDELGRVVLPVEMRRVLNINEKDPLEIYTDGENIILTKYAANMACLMTGDITTKNKTYAGGKIVLSPRGAE
MLLEDMMAALSEKK
MKNTGIVRRIDELGRVVLPVEMRRVLNINEKDPLEIYTDGENIILTKYAANMACLMTGDITTKNKTYAGGKIVLSPRGAE
MLLEDMMAALSEKK
Nucleotide
Download Length: 285 bp
>NTDB_id=259164 CXG95_RS02040 WP_003185421.1 406128..406412(+) (abrB) [Bacillus licheniformis strain PB3]
GTGAAAAATACCGGGATTGTCCGGAGAATCGATGAGCTCGGCAGAGTCGTTCTCCCGGTCGAAATGCGCAGGGTGCTGAA
TATCAATGAAAAGGACCCGCTCGAAATATATACCGACGGCGAAAACATCATTTTGACAAAATACGCCGCAAACATGGCAT
GTTTGATGACCGGCGACATCACCACGAAAAATAAAACGTATGCGGGCGGCAAAATCGTACTCAGCCCGCGCGGAGCGGAA
ATGCTCCTGGAAGATATGATGGCGGCACTGTCAGAAAAGAAATAA
GTGAAAAATACCGGGATTGTCCGGAGAATCGATGAGCTCGGCAGAGTCGTTCTCCCGGTCGAAATGCGCAGGGTGCTGAA
TATCAATGAAAAGGACCCGCTCGAAATATATACCGACGGCGAAAACATCATTTTGACAAAATACGCCGCAAACATGGCAT
GTTTGATGACCGGCGACATCACCACGAAAAATAAAACGTATGCGGGCGGCAAAATCGTACTCAGCCCGCGCGGAGCGGAA
ATGCTCCTGGAAGATATGATGGCGGCACTGTCAGAAAAGAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
56.044 |
96.809 |
0.543 |