Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CWI88_RS14455 Genome accession   NZ_CP025225
Coordinates   3012018..3012644 (-) Length   208 a.a.
NCBI ID   WP_088207547.1    Uniprot ID   -
Organism   Enterobacter cancerogenus strain CR-Eb1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3007018..3017644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI88_RS14440 (CWI88_14440) helD 3007257..3009311 (-) 2055 WP_101737938.1 DNA helicase IV -
  CWI88_RS14445 (CWI88_14445) - 3009433..3009879 (+) 447 WP_006174548.1 YccF domain-containing protein -
  CWI88_RS14450 (CWI88_14450) yccS 3009899..3012061 (+) 2163 WP_101737939.1 YccS family putative transporter -
  CWI88_RS14455 (CWI88_14455) sxy/tfoX 3012018..3012644 (-) 627 WP_088207547.1 TfoX/Sxy family DNA transformation protein Regulator
  CWI88_RS14460 (CWI88_14460) sulA 3012862..3013371 (+) 510 WP_042319464.1 SOS-induced cell division inhibitor SulA -
  CWI88_RS14465 (CWI88_14465) ompA 3013727..3014779 (+) 1053 WP_127463528.1 porin OmpA -
  CWI88_RS14470 (CWI88_14470) matP 3014843..3015295 (-) 453 WP_006174540.1 macrodomain Ter protein MatP -
  CWI88_RS14475 (CWI88_14475) - 3015482..3017242 (+) 1761 WP_101737940.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24043.62 Da        Isoelectric Point: 9.1543

>NTDB_id=259146 CWI88_RS14455 WP_088207547.1 3012018..3012644(-) (sxy/tfoX) [Enterobacter cancerogenus strain CR-Eb1]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESATYCVKHPASFLTLVKRGRPVLLN
YYRVDEGLWQDRQKLLQLSTYALDAARKERSLRYQRNRLKDLPNLTFQIEVLLYEAGITNEETLRELGAKTSWLKIRSKN
RALSIKVLFALEGAIEGMHEAALPANIRRELTEWFNTLPEVQESRSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=259146 CWI88_RS14455 WP_088207547.1 3012018..3012644(-) (sxy/tfoX) [Enterobacter cancerogenus strain CR-Eb1]
ATGAAAAAGATATCATATGAACGGATTTATAAATCGCAGGAATATCTCTCCCCTCTGGGTGAAATTCACCACCGGGCGCT
GTTCGGCGGCTACACCCTGGCGGTAGACGATGCGGTGTTTGCCATGGTGTCAGACGGTGAACTTTACCTGCGTGCCTGCG
AGGAGAGCGCGACCTATTGCGTTAAGCATCCTGCTTCCTTCTTAACGCTTGTTAAGCGAGGCCGCCCCGTCCTGCTGAAT
TACTATCGCGTGGATGAAGGGCTGTGGCAGGATCGGCAAAAACTGCTTCAGCTTTCCACTTATGCCCTCGATGCGGCACG
AAAAGAGCGTAGCCTGCGCTATCAACGAAACCGGCTCAAGGATCTGCCTAACCTGACTTTCCAGATTGAAGTGTTGCTCT
ACGAAGCCGGCATTACGAATGAAGAGACGTTGCGGGAGCTTGGCGCAAAGACCAGCTGGCTAAAAATCAGATCGAAAAAC
CGGGCGCTCAGTATCAAGGTGCTTTTTGCCCTTGAAGGGGCCATTGAGGGGATGCATGAGGCGGCACTCCCGGCGAACAT
TCGCCGGGAGCTTACGGAGTGGTTTAATACACTGCCTGAGGTGCAGGAGAGTCGTTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

61.576

97.596

0.601

Multiple sequence alignment