Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CXM95_RS00110 Genome accession   NZ_CP025223
Coordinates   22744..24114 (+) Length   456 a.a.
NCBI ID   WP_005226394.1    Uniprot ID   A0A242CQN0
Organism   Enterococcus sp. CR-Ec1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 17744..29114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXM95_RS00080 (CXM95_00080) - 18206..19024 (+) 819 WP_005232914.1 ZIP family metal transporter -
  CXM95_RS00085 (CXM95_00085) - 19082..19285 (-) 204 WP_008376766.1 hypothetical protein -
  CXM95_RS00090 (CXM95_00090) - 19437..19838 (+) 402 WP_086316721.1 DUF4809 family protein -
  CXM95_RS00095 (CXM95_00095) - 19945..21189 (-) 1245 WP_061053519.1 glutamate-5-semialdehyde dehydrogenase -
  CXM95_RS00100 (CXM95_00100) proB 21186..22001 (-) 816 WP_034872095.1 glutamate 5-kinase -
  CXM95_RS00105 (CXM95_00105) - 22190..22699 (+) 510 WP_101698723.1 dUTP diphosphatase -
  CXM95_RS00110 (CXM95_00110) radA 22744..24114 (+) 1371 WP_005226394.1 DNA repair protein RadA Machinery gene
  CXM95_RS00115 (CXM95_00115) - 24278..25417 (+) 1140 WP_005232908.1 PIN/TRAM domain-containing protein -
  CXM95_RS00120 (CXM95_00120) gltX 25587..27044 (+) 1458 WP_086372485.1 glutamate--tRNA ligase -
  CXM95_RS00125 (CXM95_00125) epsC 27305..27841 (+) 537 WP_061054472.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49604.28 Da        Isoelectric Point: 8.3034

>NTDB_id=259100 CXM95_RS00110 WP_005226394.1 22744..24114(+) (radA) [Enterococcus sp. CR-Ec1]
MAKKAKSQFVCQNCGYSSPKYLGKCPNCGSWNSMVEEVIQETADRRVRTTLTGQKMQPTKIADVVPKKEPRVQTKLAELN
RVLGGGVVPGSLILIGGDPGIGKSTLLLQVSQQLAAIGGTVLYVSGEESAEQIKMRAQRLGAIDTEFYLYGETDMSEISK
AIENIRPDYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPRMLEHMVDTVLYFE
GEKHHSFRILRAVKNRFGSTNEIGIFEMEEGGLKEVANPSQVFLEERLEGATGSAIVVAMEGSRPILVEIQALVTPTMFG
NAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTSPTECFIGEIGLTG
EIRRVNAIEQRVKEVQKLGFTKVYLPKNNLTGWQPPKGIEVEGVSTLAETLRKVFR

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=259100 CXM95_RS00110 WP_005226394.1 22744..24114(+) (radA) [Enterococcus sp. CR-Ec1]
ATGGCAAAAAAAGCAAAAAGTCAATTTGTCTGTCAAAATTGCGGGTATAGTTCCCCTAAATATTTAGGAAAATGCCCCAA
TTGCGGCAGCTGGAATTCAATGGTAGAAGAAGTGATCCAAGAAACCGCTGATCGTCGTGTACGTACGACATTGACGGGGC
AAAAGATGCAGCCGACGAAAATTGCCGATGTCGTACCGAAAAAAGAACCGCGGGTCCAAACGAAACTCGCTGAGTTGAAT
CGCGTCTTAGGCGGCGGCGTGGTCCCAGGTTCCTTAATTTTGATCGGTGGGGATCCCGGGATCGGAAAATCGACGCTGCT
CTTGCAAGTTTCCCAGCAATTAGCAGCGATCGGCGGAACGGTCTTGTATGTGTCAGGAGAAGAAAGTGCCGAGCAGATCA
AAATGCGGGCGCAGCGCTTAGGCGCCATCGACACGGAATTTTATCTCTATGGGGAAACGGACATGTCAGAGATCAGTAAA
GCGATCGAAAACATCCGCCCAGATTATGTGATCATCGATTCGATCCAAACCATGACCCAACCGGATATCACCAGTGTGGC
AGGCAGTGTCAGCCAAGTGCGAGAAACGACCGCAGAATTGCTGAAAATCGCTAAAACCAATGGCATCGCCATCTTTATCG
TTGGCCACGTGACGAAGGAAGGCTCGATCGCAGGACCGCGGATGCTGGAGCACATGGTGGATACCGTCTTGTATTTCGAA
GGCGAAAAGCACCACAGCTTTCGGATTTTGCGGGCCGTCAAAAACCGCTTTGGGTCCACCAATGAGATCGGGATTTTTGA
AATGGAAGAAGGCGGGTTGAAAGAAGTCGCCAATCCGTCACAAGTCTTTTTGGAAGAACGCTTAGAAGGCGCAACCGGAT
CGGCGATCGTAGTGGCAATGGAAGGCAGTCGGCCAATCTTGGTGGAGATCCAAGCATTGGTCACGCCAACGATGTTCGGC
AATGCCAAACGCACGACGACGGGGCTAGACTTCAACCGGGTCTCGCTGATCATGGCGGTTTTAGAAAAACGGGCAGGTTT
GCTGCTGCAAAATCAAGATGCCTACTTAAAAGCAGCCGGCGGGGTCAAATTAAATGAACCCGCGATCGATCTAGCGATCG
CTGTTAGTATCGCCTCCAGCTATAAAGAAAAAGGCACCAGCCCGACGGAGTGTTTTATCGGTGAAATTGGCTTGACGGGT
GAGATTCGCCGAGTCAATGCGATCGAACAACGGGTCAAAGAGGTGCAGAAACTGGGCTTTACAAAAGTTTATTTGCCTAA
AAACAATCTGACTGGTTGGCAGCCGCCAAAAGGCATCGAAGTCGAAGGCGTGTCTACCTTAGCCGAAACCTTACGGAAAG
TCTTCCGTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(71-221)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A242CQN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

74.725

99.781

0.746
  radA Streptococcus mitis SK321

74.505

99.781

0.743
  radA Streptococcus pneumoniae Rx1

74.505

99.781

0.743
  radA Streptococcus pneumoniae D39

74.505

99.781

0.743
  radA Streptococcus pneumoniae R6

74.505

99.781

0.743
  radA Streptococcus pneumoniae TIGR4

74.505

99.781

0.743
  radA Bacillus subtilis subsp. subtilis str. 168

67.184

98.904

0.664

Multiple sequence alignment