Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   STER_RS00235 Genome accession   NC_008532
Coordinates   31851..32624 (+) Length   257 a.a.
NCBI ID   WP_011680587.1    Uniprot ID   Q03N04
Organism   Streptococcus thermophilus LMD-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 26851..37624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STER_RS00210 (STER_0042) - 27036..28403 (+) 1368 WP_011680584.1 CHAP domain-containing protein -
  STER_RS00215 (STER_0043) - 28617..29582 (+) 966 WP_011680585.1 ribose-phosphate diphosphokinase -
  STER_RS09915 (STER_0044) - 29631..30477 (-) 847 Protein_20 transposase -
  STER_RS00230 (STER_0045) - 30689..31864 (+) 1176 WP_011680586.1 pyridoxal phosphate-dependent aminotransferase -
  STER_RS00235 (STER_0046) recO 31851..32624 (+) 774 WP_011680587.1 DNA repair protein RecO Machinery gene
  STER_RS00240 (STER_0047) plsX 32842..33846 (+) 1005 WP_011680588.1 phosphate acyltransferase PlsX -
  STER_RS00245 (STER_0048) - 33846..34091 (+) 246 WP_002949008.1 phosphopantetheine-binding protein -
  STER_RS00250 (STER_0049) purC 34376..35083 (+) 708 WP_011680589.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29783.00 Da        Isoelectric Point: 4.9666

>NTDB_id=25908 STER_RS00235 WP_011680587.1 31851..32624(+) (recO) [Streptococcus thermophilus LMD-9]
MQKLESRGVILFNRNYRENDKLVKIFTKQAGKRMFFVRGGGSGKLSAVIQPLNIAEFMMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLAALTDAAIADGVVDAELFAFLEKTLVLMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYEEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDEMKRKLRQFIDELYDNYVGIHLKSKKFI
DNLNSWGHIMSKEDNAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=25908 STER_RS00235 WP_011680587.1 31851..32624(+) (recO) [Streptococcus thermophilus LMD-9]
ATGCAGAAGCTTGAGAGTAGGGGGGTTATCCTCTTCAATCGTAATTATCGTGAGAATGATAAGCTGGTTAAGATTTTTAC
TAAACAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTGAGTGCTGTGATTCAACCTTTAAACA
TCGCTGAATTTATGATGACTGTAAATGATGAAGGTTTATCTTTCATAGAGGATTATAGTCAGGCAGAGTCTTTTAAGGAA
ATTACAAGTGATATTTTTAAACTGTCTTACGCGACCTATTTAGCTGCCTTGACTGATGCTGCTATTGCTGACGGTGTGGT
AGATGCAGAATTATTTGCATTTTTAGAGAAAACCCTTGTGTTAATGGAAGAGGGCTTAGATTATGAAATATTGACTAATA
TCTTTGAGATTCAAGTTTTGGACCGTTTTGGCGTACGATTGAATTTTCATGAATGTGTCTTTTGTCATCGTGTTGGTCTT
CCTTTTGATTTCTCGTATAAGTTCTCAGGTTTACTTTGTCCCAATCATTACGAAGAAGATGAAAGGCGTAGTCATTTGGA
CCCTAATGTGCCTTATCTTTTGGATCGTTTCCAGGGTCTTTCATTTGAAGAATTGAGAAGCATATCTGTTAAGGATGAAA
TGAAACGAAAGTTGAGACAATTTATTGATGAGCTTTATGATAATTATGTTGGGATTCATCTTAAAAGCAAGAAGTTTATT
GATAATCTAAATTCTTGGGGTCATATTATGAGTAAAGAAGATAATGCTGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q03N04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

61.66

98.444

0.607

Multiple sequence alignment