Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSEEN_RS07445 Genome accession   NC_008027
Coordinates   1671323..1671958 (+) Length   211 a.a.
NCBI ID   WP_028690976.1    Uniprot ID   A0A4Y8SF72
Organism   Pseudomonas entomophila L48     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1666323..1676958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSEEN_RS07425 (PSEEN1596) - 1666569..1667501 (+) 933 WP_011532868.1 ABC transporter ATP-binding protein -
  PSEEN_RS07430 (PSEEN1597) - 1667498..1668277 (+) 780 WP_011532869.1 ABC transporter permease -
  PSEEN_RS07435 (PSEEN1598) - 1668161..1668787 (-) 627 WP_011532870.1 DUF2062 domain-containing protein -
  PSEEN_RS07440 (PSEEN1600) - 1668931..1671135 (+) 2205 Protein_1467 DNA internalization-related competence protein ComEC/Rec2 -
  PSEEN_RS07445 (PSEEN1601) exbB 1671323..1671958 (+) 636 WP_028690976.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSEEN_RS07450 (PSEEN1602) - 1671955..1672389 (+) 435 WP_011532872.1 ExbD/TolR family protein -
  PSEEN_RS07455 (PSEEN1603) lpxK 1672389..1673399 (+) 1011 WP_011532873.1 tetraacyldisaccharide 4'-kinase -
  PSEEN_RS07460 (PSEEN1604) - 1673433..1673618 (+) 186 WP_011532874.1 Trm112 family protein -
  PSEEN_RS07465 (PSEEN1605) kdsB 1673615..1674379 (+) 765 WP_011532875.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSEEN_RS07470 (PSEEN1606) - 1674379..1674843 (+) 465 WP_011532876.1 low molecular weight protein-tyrosine-phosphatase -
  PSEEN_RS07475 (PSEEN1607) murB 1674840..1675859 (+) 1020 WP_011532877.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=25903 PSEEN_RS07445 WP_028690976.1 1671323..1671958(+) (exbB) [Pseudomonas entomophila L48]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=25903 PSEEN_RS07445 WP_028690976.1 1671323..1671958(+) (exbB) [Pseudomonas entomophila L48]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATCCTGAGTTCCATCGCCGCCATGGCGATCGTCGT
CGAGCGCCTGTGGACCTTGCGCGCCAGCCGTGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGACTCGCCGCTGGGTGAAATCCTGGCTGCGGGCCTGGCCAAC
TCGCGCCACGGCCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCCTCGCGAGTCATCCACGAGCTGGAGCGTTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCAGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCTGGCCTGATGGTCGGTATCCCGGCAGTGTTCTTCCATCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAACTGGTCGAGGTGCTGCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y8SF72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829

Multiple sequence alignment