Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   DP112_RS10230 Genome accession   NZ_CP030125
Coordinates   2065346..2065795 (-) Length   149 a.a.
NCBI ID   WP_114866931.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2060346..2070795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS10215 (DP112_10220) - 2060843..2061637 (+) 795 WP_105134312.1 formate/nitrite transporter family protein -
  DP112_RS10220 (DP112_10225) - 2061720..2063504 (-) 1785 WP_105136536.1 ABC transporter ATP-binding protein -
  DP112_RS10225 (DP112_10230) - 2063644..2065353 (-) 1710 WP_114866930.1 ABC transporter ATP-binding protein -
  DP112_RS10230 (DP112_10235) rcrR 2065346..2065795 (-) 450 WP_114866931.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  DP112_RS10235 (DP112_10240) - 2066017..2067033 (+) 1017 WP_014638751.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  DP112_RS10240 (DP112_10245) galU 2067079..2067978 (+) 900 WP_004298345.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  DP112_RS10245 (DP112_10250) - 2068000..2068677 (-) 678 WP_114866932.1 rhomboid family intramembrane serine protease -
  DP112_RS10250 (DP112_10255) - 2068661..2069203 (-) 543 WP_114866933.1 5-formyltetrahydrofolate cyclo-ligase -
  DP112_RS10255 (DP112_10260) - 2069245..2070372 (-) 1128 WP_114866934.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17551.07 Da        Isoelectric Point: 7.5184

>NTDB_id=258986 DP112_RS10230 WP_114866931.1 2065346..2065795(-) (rcrR) [Streptococcus suis strain HA1003]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSEVETFVKDIEAELKISKSVASNLVKRMEKNDFIR
VLPSQFDRGYKQLVLTEKGRSKICHLKSFHEEMHHSLFRGIQKEEFDLIRQVVDQLKENIRNYKEKNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=258986 DP112_RS10230 WP_114866931.1 2065346..2065795(-) (rcrR) [Streptococcus suis strain HA1003]
ATGGGACATACTATTGCAGATTTTCGGAATCTATTAAATCAGATTGAACAAATCAGTGAAACCATTGCAAAGGAATATGA
TGTGGAGCACCTAGCTGGACCACAGGGATGGGCTCTACGTTTCATAGCAGAACGGTCTGAAGTTGAAACCTTTGTCAAAG
ACATTGAAGCGGAGTTAAAGATTTCCAAATCCGTTGCCAGCAATCTAGTTAAGCGAATGGAGAAAAATGACTTTATTCGG
GTTTTACCTTCTCAGTTTGACAGAGGCTATAAGCAGTTGGTCTTGACAGAGAAAGGTCGGAGCAAGATTTGTCACCTAAA
ATCCTTCCATGAGGAGATGCACCATTCTCTCTTTCGAGGTATTCAAAAGGAAGAATTTGATTTGATCAGACAGGTGGTCG
ATCAATTAAAAGAAAATATTAGAAATTATAAGGAGAAGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.571

93.96

0.409