Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   DP112_RS07545 Genome accession   NZ_CP030125
Coordinates   1501987..1502637 (-) Length   216 a.a.
NCBI ID   WP_024384330.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1496987..1507637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS07540 (DP112_07540) - 1500625..1501986 (-) 1362 WP_114866698.1 HAMP domain-containing sensor histidine kinase -
  DP112_RS07545 (DP112_07545) scnR 1501987..1502637 (-) 651 WP_024384330.1 response regulator transcription factor Regulator
  DP112_RS07550 (DP112_07550) ccpA 1503705..1504709 (-) 1005 WP_004298830.1 catabolite control protein A Regulator
  DP112_RS07555 (DP112_07555) - 1504919..1506004 (+) 1086 WP_024384331.1 Xaa-Pro peptidase family protein -
  DP112_RS11190 - 1506177..1506281 (-) 105 WP_172005209.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24594.72 Da        Isoelectric Point: 4.9774

>NTDB_id=258967 DP112_RS07545 WP_024384330.1 1501987..1502637(-) (scnR) [Streptococcus suis strain HA1003]
MAKILVLEDDLVINQVVCEFLRDSGHDVLPLFDGGQALEEIQKMEFDLLILDIMVPTMTGLELLTAVRKISSVPVLVLTA
LSDEYTQLISFNQDISDFVTKPFSPLVLMKRIENILKVKHVDETIRIGDILIDQQAGYVHVGEQEVQLTKKEYEVFLYLA
KRKGNIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLHLKTVVGRGYQIEEG

Nucleotide


Download         Length: 651 bp        

>NTDB_id=258967 DP112_RS07545 WP_024384330.1 1501987..1502637(-) (scnR) [Streptococcus suis strain HA1003]
ATGGCAAAAATTTTAGTATTAGAAGATGATTTAGTTATTAATCAGGTAGTCTGCGAATTTTTAAGAGATAGTGGTCACGA
TGTTTTACCTCTATTTGACGGTGGACAGGCATTAGAAGAAATCCAGAAAATGGAATTTGATCTACTTATTTTGGATATTA
TGGTGCCGACGATGACAGGATTGGAGTTATTGACAGCAGTTCGGAAAATTTCATCTGTTCCAGTATTGGTTTTGACTGCT
TTAAGTGATGAGTATACTCAATTAATTAGCTTTAATCAGGATATAAGTGATTTTGTGACAAAGCCGTTTTCACCTCTTGT
TTTAATGAAGAGAATTGAAAATATTTTAAAAGTAAAACATGTGGATGAGACTATACGAATAGGTGACATCCTTATTGATC
AACAGGCTGGCTATGTTCATGTAGGGGAGCAGGAAGTACAGTTAACGAAGAAAGAGTATGAGGTCTTCCTCTACTTGGCA
AAAAGAAAAGGTAATATTGTGAGTCGAGATAATCTAATGATGGGAATTTGGGGGTATACAGAATTGGATAGTCGTGTGTT
AGATAATCATATTAAAAATATTCGTAAAAAGTTGCCTAGCTTACACTTAAAAACGGTAGTTGGTCGTGGTTACCAAATTG
AAGAGGGTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(144-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

36.937

100

0.38