Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DGEO_RS14555 Genome accession   NC_008025
Coordinates   2465263..2466339 (+) Length   358 a.a.
NCBI ID   WP_011531456.1    Uniprot ID   A0A4R5GCX8
Organism   Deinococcus geothermalis DSM 11300     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2460263..2471339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGEO_RS14530 (Dgeo_2340) - 2460702..2460935 (+) 234 WP_011531451.1 hypothetical protein -
  DGEO_RS14535 (Dgeo_2341) - 2460963..2462513 (+) 1551 WP_011531452.1 dihydrolipoamide acetyltransferase family protein -
  DGEO_RS14540 (Dgeo_2342) - 2462676..2463119 (+) 444 WP_011531453.1 hypothetical protein -
  DGEO_RS14545 (Dgeo_2343) - 2463120..2463779 (+) 660 WP_011531454.1 response regulator transcription factor -
  DGEO_RS14550 (Dgeo_2344) - 2463873..2465234 (+) 1362 WP_011531455.1 HAMP domain-containing sensor histidine kinase -
  DGEO_RS14555 (Dgeo_2345) dprA 2465263..2466339 (+) 1077 WP_011531456.1 DNA-processing protein DprA Machinery gene
  DGEO_RS14560 (Dgeo_2346) - 2466348..2466638 (-) 291 WP_041221447.1 hypothetical protein -
  DGEO_RS14565 (Dgeo_2347) - 2466734..2467021 (-) 288 WP_011531458.1 hypothetical protein -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 37083.54 Da        Isoelectric Point: 7.0280

>NTDB_id=25896 DGEO_RS14555 WP_011531456.1 2465263..2466339(+) (dprA) [Deinococcus geothermalis DSM 11300]
MTTTLPQAELQALLTLRFTPGLGPRRIEQLRRHFGSAEAALAAPLTALRDVPGLDARSVAALGTAKPREQAEAELVKARK
EGVTLLGRGLPGYPPALEALGDPPPVLWVKGELPDFPVVPRAVGIVGTRGASPHALSLTRTLAADLARAGVIVISGLARG
IDTAAHAASVEAGGHSVGVLGSAVNVIYPSENAHLARHLTLVSEYPLGTGPAQHHFPTRNRLIAALSAATVVVEGELKSG
ALITATHALECGRTVCAVPGRAGDPRAAGPHRLLREGAVLTETAQDILNELGWGEAPAAPTSDLPPEQARTYAALTTPAT
LDDLQAATGLTLPDLQTALVMLQLLGLAEEVGGRWARR

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=25896 DGEO_RS14555 WP_011531456.1 2465263..2466339(+) (dprA) [Deinococcus geothermalis DSM 11300]
GTGACCACCACGCTTCCCCAGGCGGAGCTGCAGGCGCTGCTGACCCTGCGCTTCACACCCGGCCTTGGGCCGCGCCGCAT
CGAGCAGTTGCGGCGGCACTTCGGCAGCGCCGAGGCCGCTCTGGCTGCTCCGCTCACCGCCCTGCGCGACGTGCCCGGCC
TGGACGCCAGATCGGTTGCGGCGCTGGGAACGGCCAAACCCCGCGAGCAGGCGGAGGCCGAACTGGTCAAGGCCCGGAAG
GAGGGCGTGACGCTGCTGGGCCGCGGCCTGCCGGGCTACCCGCCCGCGCTGGAGGCCCTGGGAGACCCGCCGCCGGTCCT
GTGGGTCAAAGGGGAACTCCCGGATTTCCCGGTTGTGCCGCGGGCTGTCGGAATCGTGGGCACGCGTGGAGCGAGTCCAC
ACGCCCTCAGCCTGACGCGGACGCTGGCCGCGGACCTGGCACGCGCTGGGGTGATCGTCATCAGCGGTTTGGCCCGCGGC
ATTGACACCGCGGCGCACGCGGCGAGCGTGGAGGCGGGGGGTCACAGTGTGGGCGTGCTGGGAAGCGCCGTGAACGTTAT
CTATCCCAGTGAGAATGCCCACCTCGCCCGCCACCTGACGCTGGTGAGCGAGTACCCCCTGGGCACCGGTCCCGCCCAAC
ACCATTTCCCGACCCGAAATCGTCTGATCGCCGCGCTCTCGGCGGCGACGGTCGTCGTAGAGGGCGAGCTGAAAAGCGGC
GCCCTGATCACCGCCACACATGCCTTGGAATGCGGACGAACGGTCTGCGCTGTGCCGGGGCGCGCTGGGGATCCTCGTGC
CGCCGGACCTCATCGCCTGCTGCGCGAGGGTGCGGTGCTGACCGAGACGGCGCAGGATATCCTCAACGAACTGGGCTGGG
GGGAAGCCCCCGCCGCGCCCACCTCCGACCTCCCCCCTGAACAGGCCCGGACCTACGCGGCCCTCACCACACCTGCCACC
CTGGACGACCTACAAGCCGCCACCGGTCTCACGTTGCCCGATCTCCAGACAGCCCTCGTGATGCTGCAACTGCTAGGACT
GGCCGAAGAGGTAGGCGGTCGCTGGGCGCGGCGGTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(79-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R5GCX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

72.65

98.045

0.712

Multiple sequence alignment