Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   DP112_RS06670 Genome accession   NZ_CP030125
Coordinates   1330627..1331109 (+) Length   160 a.a.
NCBI ID   WP_105150869.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1325627..1336109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS06640 (DP112_06640) - 1325656..1326804 (+) 1149 WP_114866624.1 cobalamin-independent methionine synthase II family protein -
  DP112_RS06645 (DP112_06645) - 1326875..1328185 (-) 1311 WP_044683219.1 GntP family permease -
  DP112_RS06650 (DP112_06650) folK 1328236..1328724 (-) 489 WP_114866625.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  DP112_RS06655 (DP112_06655) folB 1328721..1329083 (-) 363 WP_105106228.1 dihydroneopterin aldolase -
  DP112_RS06660 (DP112_06660) folP 1329076..1329888 (-) 813 WP_114866626.1 dihydropteroate synthase -
  DP112_RS06665 (DP112_06665) folE 1329897..1330460 (-) 564 WP_002938082.1 GTP cyclohydrolase I FolE -
  DP112_RS06670 (DP112_06670) mutX 1330627..1331109 (+) 483 WP_105150869.1 8-oxo-dGTP diphosphatase Machinery gene
  DP112_RS06675 (DP112_06675) - 1331153..1331830 (-) 678 WP_114866627.1 DUF4956 domain-containing protein -
  DP112_RS06680 (DP112_06680) - 1331817..1332560 (-) 744 WP_024384806.1 polyphosphate polymerase domain-containing protein -
  DP112_RS06685 (DP112_06685) - 1332753..1333055 (+) 303 WP_029171211.1 hypothetical protein -
  DP112_RS06690 (DP112_06690) - 1333076..1333342 (-) 267 WP_114866628.1 DUF2087 domain-containing protein -
  DP112_RS06695 (DP112_06695) pheT 1333397..1335796 (-) 2400 WP_114866629.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18509.88 Da        Isoelectric Point: 4.6409

>NTDB_id=258955 DP112_RS06670 WP_105150869.1 1330627..1331109(+) (mutX) [Streptococcus suis strain HA1003]
MTKKPVQLATICYIDNGKEFLLLHRNKKENDVHQGKWIGVGGKLEPGETPQACAIREVFEETGLTVTKHALKGVITFPDF
TPNTDWYTYVFKITGFEGSLIDCNEGDLEWVPYDQVLSKPTWEGDRHFQAWLLENRPFFSACFRYDGDKLLDYSVDFYEE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=258955 DP112_RS06670 WP_105150869.1 1330627..1331109(+) (mutX) [Streptococcus suis strain HA1003]
ATGACCAAGAAACCCGTCCAACTCGCTACGATTTGCTACATTGATAATGGCAAGGAATTTCTTCTCCTTCATCGAAACAA
GAAAGAAAACGATGTCCATCAAGGAAAATGGATTGGAGTTGGTGGTAAACTAGAACCTGGCGAAACACCACAGGCTTGTG
CCATTCGAGAAGTCTTTGAGGAAACTGGGCTTACTGTAACGAAGCATGCTCTAAAAGGAGTGATAACCTTTCCAGACTTT
ACTCCAAACACTGACTGGTACACCTATGTCTTTAAGATAACTGGTTTTGAAGGAAGTTTGATCGATTGCAACGAAGGCGA
TTTAGAATGGGTTCCTTATGACCAAGTGCTCTCCAAACCAACTTGGGAAGGCGATCGCCATTTTCAAGCATGGCTCTTGG
AAAACCGTCCCTTCTTCTCTGCATGCTTTCGCTATGATGGGGACAAACTGCTGGATTACAGCGTTGATTTTTATGAGGAG
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(8-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

79.085

95.625

0.756