Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   DP112_RS06590 Genome accession   NZ_CP030125
Coordinates   1312162..1314375 (-) Length   737 a.a.
NCBI ID   WP_109371569.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1307162..1319375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS06560 (DP112_06560) - 1307289..1308083 (-) 795 WP_114866615.1 Nif3-like dinuclear metal center hexameric protein -
  DP112_RS06565 (DP112_06565) - 1308073..1308756 (-) 684 WP_114866616.1 tRNA (adenine(22)-N(1))-methyltransferase TrmK -
  DP112_RS06570 (DP112_06570) - 1308758..1309432 (-) 675 WP_024385622.1 DnaD domain-containing protein -
  DP112_RS06575 (DP112_06575) metA 1309442..1310383 (-) 942 WP_014637718.1 homoserine O-succinyltransferase -
  DP112_RS06580 (DP112_06580) - 1310487..1310999 (-) 513 WP_002937136.1 adenine phosphoribosyltransferase -
  DP112_RS06585 (DP112_06585) - 1311014..1312183 (-) 1170 WP_114866617.1 DUF3114 domain-containing protein -
  DP112_RS06590 (DP112_06590) recJ 1312162..1314375 (-) 2214 WP_109371569.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  DP112_RS06595 (DP112_06595) cls 1314532..1316079 (-) 1548 WP_024407402.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 82626.28 Da        Isoelectric Point: 4.5071

>NTDB_id=258954 DP112_RS06590 WP_109371569.1 1312162..1314375(-) (recJ) [Streptococcus suis strain HA1003]
MIKPNYDWQLLTGFSDEQFIKIAKKEGVDPVAAKLLYERGIHSAEELHTFLQPSLEDLHDPYLLHDMDKAVERIRRAIED
YEQILIYGDYDADGMTSASILKETLEEMGAEVQVYLPNRFTDGYGPNQSVYKYFIEQQGISLIVTVDNGVAGHEAIAYAQ
EMGVDVVVTDHHSMQETLPNAYAIVHPEHPEGNYPFKHLAGCGVAFKLACALLETVHADLLDLVAIGTIADMVSLTDENR
VMVKYGLSLLKQTERAGLQELIKIAGIDIDSIDEETVGFQLAPRLNALGRLDDPNPAIELLTGFDDEEAHEIALMIDSKN
VERKDVVQAIYDEAKTMLRHDRPVQVLAKEGWNPGVLGIVAGRLLEELHQPVIVLSIEDGKAKGSARSVEAVDIFKALKD
HQDLFIAFGGHAGAAGMTLEVDKLEELALTLADYIIENKLDLSSKSSLVLDEELDLEELTLDTLKSFEKLAPYGMDNKKP
VFYIRDFQVESARTMGQNNAHLKLRITKGAAGFDVVAFGKGNLALEFSQAKGLELAVTLSVNQWNGNTSLQLMLVDARVN
GVQLYNIRGKQHPIPAGVPILDIENPVADNKAIVLANLPEDLSSLRSYFQEREFEAIYFKNEIAKPYYLDGYGSREQFAK
LYKTIYQFDEFDVRYKLKDLAGYLKIKDSLLVKMIQIFQELEFVTITDGVMRVNKEAQKREISESQIYQELKETVIQQEL
MALGTVQEIYEWLCGRV

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=258954 DP112_RS06590 WP_109371569.1 1312162..1314375(-) (recJ) [Streptococcus suis strain HA1003]
GTGATAAAACCCAATTATGACTGGCAATTATTGACCGGTTTTTCTGATGAACAATTTATCAAAATTGCTAAAAAAGAAGG
AGTGGACCCGGTAGCGGCTAAGTTGCTGTATGAACGTGGCATCCATTCAGCGGAAGAATTGCATACTTTCTTACAACCAA
GCTTAGAAGATCTTCATGATCCCTATTTACTACATGATATGGACAAGGCGGTAGAGCGGATTCGCCGAGCAATCGAAGAT
TACGAACAAATTTTGATTTATGGAGATTATGATGCAGATGGCATGACCTCGGCATCTATTCTGAAAGAAACTCTGGAGGA
AATGGGGGCAGAAGTCCAAGTTTATCTTCCCAACCGTTTCACAGATGGCTATGGGCCAAATCAGTCAGTTTACAAGTATT
TTATCGAGCAGCAGGGGATTTCTCTTATTGTGACGGTGGACAATGGCGTAGCGGGTCATGAAGCGATTGCCTATGCCCAG
GAAATGGGGGTCGATGTTGTCGTGACAGACCACCATTCCATGCAGGAAACTCTTCCCAATGCCTATGCGATTGTACATCC
AGAGCATCCAGAGGGAAATTATCCCTTCAAACATTTGGCAGGTTGCGGTGTGGCTTTCAAATTGGCCTGTGCCCTTCTTG
AAACGGTTCATGCAGACTTGCTGGATTTGGTCGCAATTGGCACCATCGCTGATATGGTCAGCTTGACCGATGAGAATCGT
GTCATGGTCAAATATGGTCTCTCGCTTCTCAAACAGACTGAGCGAGCAGGTTTGCAAGAGTTGATAAAGATAGCTGGTAT
TGACATAGACAGTATTGATGAAGAAACAGTTGGTTTCCAACTTGCTCCGAGGTTGAATGCCCTTGGTCGACTTGATGATC
CTAATCCAGCCATCGAATTACTGACTGGTTTTGATGACGAAGAGGCCCATGAGATTGCTCTCATGATTGACAGTAAGAAT
GTCGAGCGTAAGGATGTCGTCCAAGCAATTTACGATGAAGCAAAAACCATGCTCCGTCATGATAGACCTGTTCAAGTTCT
GGCTAAAGAAGGTTGGAACCCAGGTGTTTTAGGGATTGTAGCAGGACGCCTACTAGAAGAATTGCACCAGCCTGTTATTG
TCTTGTCTATTGAAGATGGTAAGGCAAAGGGTTCGGCTCGTTCGGTTGAAGCGGTTGATATTTTCAAGGCCCTTAAAGAT
CATCAGGACCTCTTTATCGCCTTTGGTGGTCATGCTGGTGCAGCAGGTATGACCTTGGAAGTTGACAAACTTGAAGAGCT
TGCTCTAACCTTGGCAGACTACATTATCGAAAATAAATTGGATTTATCCAGCAAGTCTTCGCTGGTCTTAGATGAAGAAT
TGGATTTAGAGGAATTAACCCTAGATACTCTAAAATCTTTCGAGAAGCTTGCGCCTTACGGCATGGATAATAAAAAGCCT
GTATTCTACATCAGAGACTTTCAGGTGGAATCAGCAAGAACCATGGGGCAGAATAATGCCCATTTGAAACTACGCATTAC
TAAAGGTGCTGCTGGATTTGATGTGGTTGCTTTTGGTAAGGGCAATCTAGCCTTGGAATTTTCACAGGCCAAGGGCTTAG
AACTAGCTGTTACCTTGTCTGTCAATCAATGGAATGGCAATACCAGTCTTCAGCTCATGTTGGTTGATGCTCGGGTCAAT
GGTGTTCAACTTTATAATATTCGTGGAAAGCAACATCCTATTCCTGCAGGAGTCCCAATTTTGGACATTGAAAATCCAGT
AGCAGATAACAAAGCAATTGTCTTGGCTAACTTGCCTGAGGACCTCAGTAGTCTGCGAAGCTATTTTCAGGAAAGAGAAT
TTGAAGCTATTTATTTTAAAAATGAAATTGCCAAACCGTACTATCTAGATGGTTATGGTAGCCGAGAACAATTCGCTAAA
TTGTATAAGACTATTTACCAATTTGATGAGTTTGATGTCCGCTACAAACTGAAAGATTTGGCTGGTTACTTAAAAATTAA
GGACAGTCTCTTGGTCAAAATGATTCAGATTTTCCAAGAATTAGAATTCGTCACGATTACGGATGGGGTCATGCGGGTCA
ACAAAGAGGCGCAGAAGCGAGAGATTTCAGAAAGTCAAATATATCAAGAATTGAAAGAAACAGTTATCCAACAAGAGTTG
ATGGCGCTTGGCACTGTTCAGGAAATTTATGAATGGCTATGTGGTCGCGTTTGA

Domains

Predicted by InterProScan.

RecJ OB domain (RecJ_OB)

(451-556)

DHHA1 domain (DHHA1)

(317-433)

DHH family (DHH)

(83-228)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(588-733)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

72.962

99.864

0.729
  recJ Bacillus subtilis subsp. subtilis str. 168

38.235

100

0.388