Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   DP112_RS05195 Genome accession   NZ_CP030125
Coordinates   1034239..1035975 (-) Length   578 a.a.
NCBI ID   WP_114866504.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1029239..1040975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS05180 (DP112_05180) - 1030090..1031376 (-) 1287 WP_002940676.1 homoserine dehydrogenase -
  DP112_RS05185 (DP112_05185) - 1031481..1032404 (+) 924 WP_114866502.1 polysaccharide deacetylase family protein -
  DP112_RS05190 (DP112_05190) rcrQ 1032461..1034230 (-) 1770 WP_114866503.1 ABC transporter ATP-binding protein Regulator
  DP112_RS05195 (DP112_05195) rcrP 1034239..1035975 (-) 1737 WP_114866504.1 ABC transporter ATP-binding protein Regulator
  DP112_RS05200 (DP112_05200) - 1036051..1036293 (-) 243 WP_012028079.1 KH domain-containing protein -
  DP112_RS05205 (DP112_05205) rpsP 1036315..1036587 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  DP112_RS05210 (DP112_05210) - 1036712..1037020 (-) 309 WP_164503915.1 DUF4298 domain-containing protein -
  DP112_RS05215 (DP112_05215) pcp 1037020..1037667 (-) 648 WP_002940685.1 pyroglutamyl-peptidase I -
  DP112_RS05220 (DP112_05220) - 1037664..1038419 (-) 756 WP_105140740.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65099.41 Da        Isoelectric Point: 5.1918

>NTDB_id=258949 DP112_RS05195 WP_114866504.1 1034239..1035975(-) (rcrP) [Streptococcus suis strain HA1003]
MNLIWTYLKKYPKWIALDLLGAFLFVVVNLGLPTFLARMIDQGITKNDVSQLYFWAGMMGLIVLLGIVGRVTLAYAAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFAEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVIVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQEERFESVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALDPLQTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
DGITETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVHLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRARLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=258949 DP112_RS05195 WP_114866504.1 1034239..1035975(-) (rcrP) [Streptococcus suis strain HA1003]
ATGAATCTGATTTGGACCTACTTAAAAAAATATCCTAAGTGGATTGCCTTGGACTTGTTGGGGGCCTTCTTGTTTGTAGT
GGTCAATTTGGGCTTGCCGACTTTTTTGGCTAGGATGATTGACCAAGGAATTACAAAGAACGATGTTAGTCAGCTCTATT
TCTGGGCGGGGATGATGGGACTGATTGTCCTGCTCGGTATTGTTGGCCGAGTGACACTTGCCTATGCAGCTGGAAAATTG
ACGACCAATATCGTCAAAGATATTCGAAATGATCTGTATGAGAAAATTCAGGACTACTCTCATCATGAATATGAGCAGAT
TGGTGTCTCTTCTCTAGTTGCTCGTATGACCAATGATGCTTTTGTCTTGATGCAGTTTGCGGAGATGGTATTGAAGCTGG
GAATTATCACTCCCTTGATGATGATTGCTTCTGTTATCATGACCTTGGTAACCAGTCCAAGTCTGGCTTGGACAGTCGCA
GTAGCTATGCCGTTTCTTGTTATCGTTATTTTCTATGTAGCAACCAAAACCCGTCCTCTTTCTGAAAAGCAACAAAAACG
TTTGGATACGATCAACCAATATGTTCGTGAAAATCTCATGGGCTTACGTGTCATTCGTGCCTTTACTCGTGAGGAGTTTC
AAGAGGAGCGCTTTGAGTCGGTCAATGAGGAATATACCGATATTTCCAAAAAACTCTTTAATCTGACTGGATTGACAGAG
CCGCTCTTTGTCCAGATTATCATTGCTATGATTGTGGCCATTGTCTGGTTCGCATTGGATCCTTTGCAAACAGGTAGTCT
GCAAATCGGTGATTTGGTAGCCTTTATCGAATATAGTTTCCACGCGCTTTTCTCATTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCACGTATGTCCGTATCGAGCCAACGGATTCAGGAAGTCTTGGACATGCCCATTTCCATTTCTAAGAATGAA
GATGGGATTACTGAAACAGATACTCGTGGTTATTTGGAATTTGAAAATGTAACTTTTGCCTATCCTGGTGAAACGGAATC
GCCTGTTCTCCACAATATTTCATTTAAGGCTAAGCCTGGAGAAACCATTGCCTTTATTGGTTCAACAGGTTCTGGTAAGT
CTTCTTTGGTACATTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTAGTGGACGGTGTGGATGTCAGACGC
TACAATCTAAAGGCACTCCGCAGCAAGATTGGCTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCTGAACTTCATGATGCGACGGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAAAAATTCGACACCCATCTAGCAGAAGGCGGAAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCGCGTGCCATTGTCAAACAGCCTGATATTTATATCTTTGATGATTCTTTCTCAGCCTTGGATTATAAGACGGATGC
CATTTTGAGAGCTCGTTTGAAGGAAGTAACGGAAAATGCGACGGTGCTGATTGTTGCCCAACGTGTCGGAACCATTATGG
ATGCTGACCAGATTATCGTGCTGAACGAAGGTGAAATCGTTGGTCGTGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTACCGAGAAATTGCCAACTCTCAACTTAACCGTCAATCGTTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.333

100

0.398