Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DP112_RS05190 Genome accession   NZ_CP030125
Coordinates   1032461..1034230 (-) Length   589 a.a.
NCBI ID   WP_114866503.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1027461..1039230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS05170 (DP112_05170) murB 1028083..1028991 (-) 909 WP_024406308.1 UDP-N-acetylmuramate dehydrogenase -
  DP112_RS05175 (DP112_05175) thrB 1029226..1030086 (-) 861 WP_105139462.1 homoserine kinase -
  DP112_RS05180 (DP112_05180) - 1030090..1031376 (-) 1287 WP_002940676.1 homoserine dehydrogenase -
  DP112_RS05185 (DP112_05185) - 1031481..1032404 (+) 924 WP_114866502.1 polysaccharide deacetylase family protein -
  DP112_RS05190 (DP112_05190) rcrQ 1032461..1034230 (-) 1770 WP_114866503.1 ABC transporter ATP-binding protein Regulator
  DP112_RS05195 (DP112_05195) rcrP 1034239..1035975 (-) 1737 WP_114866504.1 ABC transporter ATP-binding protein Regulator
  DP112_RS05200 (DP112_05200) - 1036051..1036293 (-) 243 WP_012028079.1 KH domain-containing protein -
  DP112_RS05205 (DP112_05205) rpsP 1036315..1036587 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  DP112_RS05210 (DP112_05210) - 1036712..1037020 (-) 309 WP_164503915.1 DUF4298 domain-containing protein -
  DP112_RS05215 (DP112_05215) pcp 1037020..1037667 (-) 648 WP_002940685.1 pyroglutamyl-peptidase I -
  DP112_RS05220 (DP112_05220) - 1037664..1038419 (-) 756 WP_105140740.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65704.85 Da        Isoelectric Point: 6.0370

>NTDB_id=258948 DP112_RS05190 WP_114866503.1 1032461..1034230(-) (rcrQ) [Streptococcus suis strain HA1003]
MKNRSVFTRVWDYLRRYKSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDMANGVDGAQINYSYIAIMLAIYALR
ALMYEIGAYGSTYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLALVVVTLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
AGLQEVGFKASFMSGLLMPLVHGLSNIAYVVVALLAGLKVIAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDANALELTASLTGQVSFEQVEFGYSEDKPLIRNFNLDVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIRKISRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSESK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=258948 DP112_RS05190 WP_114866503.1 1032461..1034230(-) (rcrQ) [Streptococcus suis strain HA1003]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTGCGTCGTTACAAATCTTCTGTATTTTTAGCTGTTTTTCT
AAAGACCATCAGTGCAGTTATGAATGCCTTGGAACCCTTTGTATTGGGGCTTATCATCACAGAATTGACCAAGAATCTGT
TGGATATGGCAAATGGAGTAGACGGAGCGCAGATTAACTATTCCTACATTGCCATCATGCTTGCCATCTATGCCCTTCGT
GCCCTTATGTATGAAATCGGCGCCTATGGTTCTACCTATTTTATGACTAAGGCGGTACAGGGAGCAACCAAGGAACTGCG
GCAGGATTTGAGTCACAAGATTAACAAGATTCCTGTTTCTTATTTTGACAAGCACCAGTATGGTGATTTGCTAGGTCGTT
TTACAAGCGATGTGGAGACTGTGTCGAATGCTCTGCAACAAAGTTTCCTTCAGTTAGTCAATGCCGTTCTGACTCTCTCT
CTAGCCATTTTCATGTGTTTCTGGTTGGATGTATCCCTAGCACTTGTAGTCGTAACCTTGGTTCCAGTGACCTATTTTGG
TTCTAAGTTTGTCATGGGCAAATCCCAGCCATATTTCAAGCAGCAGGCTGATGCTCTAGGTCGTTTGAACGGCTTTGTCC
AAGAAAATCTGACAGGTTTTAACGTTCTCAAACTCTACGGCCGTGAAGAAATTTCTACAGAAGAATTTCGCCAGATTACC
GCAGGTTTGCAGGAAGTTGGTTTCAAGGCTAGTTTTATGTCAGGCTTGCTCATGCCCTTGGTACACGGCTTATCGAACAT
TGCCTATGTCGTCGTGGCCTTACTTGCTGGTCTGAAAGTTATTGCAGGTACATTGACGGTGGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAGTTGGCACCCCAGTTGCAGTCTGCTAAATCTTCC
CTTGAACGCATCTTTTCAGTCTTAGATGAGCTTGACGAAGAAGACGCCAATGCGCTAGAGTTGACAGCGAGTCTGACCGG
ACAAGTCAGCTTTGAACAGGTCGAATTCGGCTATTCAGAAGACAAGCCACTTATCCGTAACTTTAATCTTGATGTTAAGC
CAGGTGAAATGGTGGCTATCGTTGGACCAACAGGGGCTGGTAAGACAACCCTCATCAACCTTCTCATGCGTTTCTATGAT
GTCACATCCGGTGCTATCAAGGTGGATGGTCAGGATATTAGAAAGATTTCTCGTCAATCCTACCGTAGTCAATTTGGTAT
GGTCTTGCAGGATGCTTGGCTCTATGAAGGGACCATCAAGGAAAACCTGCGTTTTGGACGTCTGGATGCGACGGATGAGG
AAATTGTGGAGGCTGCCAAAGCCGCCAACGTTGACCATTTTATTCGTACCCTGCCTGGCGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACCATTGCGCGTGCCTTGTTGGCGGATCCTGCTATTCT
GATTCTTGACGAAGCGACTTCTTCAGTTGATACTCGTTTGGAACTCTTGATTCAAAAAGCTATGAAACGATTAATGAAGG
GACGAACAAGTTTTGTCATAGCTCATCGCTTATCTACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGATAAAGGTTTCTATTATAATCTGTATCAAAGTCAGTTTAGCGA
ATCCAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-304)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.729

100

0.438