Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   DP112_RS02635 Genome accession   NZ_CP030125
Coordinates   512635..514296 (+) Length   553 a.a.
NCBI ID   WP_114866276.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 507635..519296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS02605 (DP112_02605) - 507923..508831 (-) 909 WP_029186525.1 neutral zinc metallopeptidase -
  DP112_RS02610 (DP112_02610) xseA 508998..510341 (+) 1344 WP_105208347.1 exodeoxyribonuclease VII large subunit -
  DP112_RS02615 (DP112_02615) - 510316..510531 (+) 216 WP_002936269.1 exodeoxyribonuclease VII small subunit -
  DP112_RS02620 (DP112_02620) - 510531..511400 (+) 870 WP_114866274.1 polyprenyl synthetase family protein -
  DP112_RS02625 (DP112_02625) - 511393..512214 (+) 822 WP_074391553.1 TlyA family RNA methyltransferase -
  DP112_RS02630 (DP112_02630) - 512207..512632 (+) 426 WP_114866275.1 arginine repressor -
  DP112_RS02635 (DP112_02635) recN 512635..514296 (+) 1662 WP_114866276.1 DNA repair protein RecN Machinery gene
  DP112_RS02640 (DP112_02640) - 514390..515223 (+) 834 WP_044756727.1 DegV family protein -
  DP112_RS02645 (DP112_02645) - 515216..516049 (+) 834 WP_024378958.1 SGNH/GDSL hydrolase family protein -
  DP112_RS02650 (DP112_02650) - 516021..516617 (+) 597 WP_105135782.1 YpmS family protein -
  DP112_RS02655 (DP112_02655) - 516707..516982 (+) 276 WP_024385016.1 HU family DNA-binding protein -
  DP112_RS02660 (DP112_02660) - 517190..517354 (+) 165 WP_164503889.1 hypothetical protein -
  DP112_RS02670 (DP112_02670) - 517705..518172 (+) 468 WP_024385015.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62700.91 Da        Isoelectric Point: 4.6542

>NTDB_id=258934 DP112_RS02635 WP_114866276.1 512635..514296(+) (recN) [Streptococcus suis strain HA1003]
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGAAKAEIEGLFSFENSRALEQIL
LEVGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDR
YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALLDNED
FSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYYVVEDVTKRLSDVVDNLDFDGNRLLQLESRLDLLNTITKKYGGTV
DDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELAVVLEDIIRQELQDLYMEKARFQVRFTK
GKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=258934 DP112_RS02635 WP_114866276.1 512635..514296(+) (recN) [Streptococcus suis strain HA1003]
ATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAACGGGATGACCATCCT
ATCTGGTGAAACAGGTGCAGGTAAATCCATTATCATTGATGCCATGAACCTGATGCTAGGGGCGCGTGCGACGACAGATG
TTATCAGACATGGGGCCGCCAAGGCTGAGATTGAAGGGCTTTTTTCTTTTGAAAATAGCAGAGCTCTTGAGCAGATTTTG
CTTGAAGTGGGGATTGAAGTAGCTGACGAGCTTATTATCCGTCGTGAAATCTTACAAAATGGCCGTTCGGTCAGCCGTGT
CAATGGACAAATGGTCAATTTATCTGTCTTGAAACAGATTGGGCAATATTTAGTAGATATTCATGGTCAACATGACCAGG
AAGAATTGATGAAGTCCCAACACCATATCCGTCTTTTGGACAGTTTCGGAGAAGATGAGTTTTGGAGTCTGAAAGACCGT
TATCAGACAACCTTTGATGCCTATCGTAGTCTTCGCAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAAGAACACAAGGC
GCGGATTGAGATGTTGGAATACCAAATTGCTGAAATCGAGGCAGCAGATTTGAAGTCTGGCGAAGATATTCAACTCAATC
AGGAACGAGATAAACTGCTCAACCACAAACAAATTGCAGATACACTGACCAATGCCTATGCACTGTTAGATAATGAAGAT
TTTTCAAGCTTGAACAACCTACGTTCAGCTATGAGTGACTTGCAAAGTTTGGAAGAATTTGATCCAGACTACAAACAGCT
CTCTTCTAGCCTGACAGAAGCTTATTATGTCGTTGAAGATGTGACCAAGCGTCTCAGTGATGTGGTGGACAATCTAGACT
TTGATGGCAATCGTCTCTTGCAATTGGAAAGTCGCCTGGATTTGCTCAATACCATTACGAAGAAATATGGTGGAACTGTC
GATGATGTTTTGGACTATTTTAGTAAAATCAGTGAAGAATACAATCTATTGACAGGCAATGATTTATCTGGTGATGATTT
GGAAGTTCAGCTTAAGAACTTAGAGAAAGAATTGGTTGAACGAGCAGGTCAGCTCAGCCAATCACGCCATGAATTGGCTG
TTGTTTTAGAAGATATTATCCGCCAAGAATTGCAAGACTTGTATATGGAGAAAGCTCGTTTCCAAGTTCGATTTACTAAA
GGAAAATTTAATCGAGAAGGAAATGAAACAGTAGAATTTTACATCTCCACCAATCCTGGCGAAGACTTCAAGCCTCTCGT
TAAGGTAGCTTCTGGAGGAGAATTGTCTCGCTTGATGTTGGCCATTAAGTCAGCCTTTGCCCGTAAAGAAGGTAAAACTT
CCATTGTCTTTGATGAGGTGGATACAGGGGTATCTGGACGTGTGGCCCAGGCAATTGCCCAGAAAATTTACAAAATCGGA
CAATATGGACAAGTATTGGCGATTTCCCATCTACCACAAGTCATTGCTATTGCAGATTATCAGTTCTTTATTGAGAAAAT
ATCCGACGAACATTCGACCGTTTCTCGTGTCCGTCTCTTGACCAAAGAAGAGCGTATTGAGGAAATTGCCAAGATGTTAG
CCGGTGACAAAATCACAGATGCAGCCCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.509

100

0.448

Multiple sequence alignment