Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DP112_RS01210 Genome accession   NZ_CP030125
Coordinates   210238..210951 (+) Length   237 a.a.
NCBI ID   WP_044683691.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 205238..215951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS01200 (DP112_01200) treC 206044..207669 (-) 1626 WP_114866153.1 alpha,alpha-phosphotrehalase -
  DP112_RS01205 (DP112_01205) treP 208010..210004 (-) 1995 WP_114866154.1 PTS system trehalose-specific EIIBC component -
  DP112_RS01210 (DP112_01210) treR 210238..210951 (+) 714 WP_044683691.1 trehalose operon repressor Regulator
  DP112_RS01215 (DP112_01215) - 211009..211320 (+) 312 WP_002935948.1 hypothetical protein -
  DP112_RS01220 (DP112_01220) - 211317..211865 (+) 549 WP_002935945.1 CvpA family protein -
  DP112_RS01225 (DP112_01225) mutS/mutS2 212204..214537 (+) 2334 WP_114866155.1 endonuclease MutS2 Machinery gene
  DP112_RS01230 (DP112_01230) - 214556..215209 (+) 654 WP_114867000.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27159.01 Da        Isoelectric Point: 6.7418

>NTDB_id=258920 DP112_RS01210 WP_044683691.1 210238..210951(+) (treR) [Streptococcus suis strain HA1003]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTSREERDLMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=258920 DP112_RS01210 WP_044683691.1 210238..210951(+) (treR) [Streptococcus suis strain HA1003]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGGTTAACT
TCTTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCATTTGACAGGTTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCTGTTGTGGATACAGATTATCTTGCTGTTGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATTTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAGTCGAGAAGA
GCGCGATCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAGCAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.564

98.734

0.519