Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CXL13_RS15245 Genome accession   NZ_CP025217
Coordinates   2927739..2928344 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Tennessee strain PIR00537     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2922739..2933344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXL13_RS15230 (CXL13_15225) helD 2922956..2925010 (-) 2055 WP_000420512.1 DNA helicase IV -
  CXL13_RS15235 (CXL13_15230) - 2925134..2925580 (+) 447 WP_001261222.1 YccF domain-containing protein -
  CXL13_RS15240 (CXL13_15235) yccS 2925599..2927752 (+) 2154 WP_000950881.1 YccS family putative transporter -
  CXL13_RS15245 (CXL13_15240) sxy/tfoX 2927739..2928344 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  CXL13_RS15250 (CXL13_15245) sulA 2928561..2929070 (+) 510 WP_000288734.1 SOS-induced cell division inhibitor SulA -
  CXL13_RS15255 (CXL13_15250) ompA 2929427..2930479 (+) 1053 WP_001670727.1 porin OmpA -
  CXL13_RS15260 (CXL13_15255) matP 2930551..2931003 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  CXL13_RS15265 (CXL13_15260) - 2931189..2932949 (+) 1761 WP_000156456.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=258908 CXL13_RS15245 WP_001202375.1 2927739..2928344(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Tennessee strain PIR00537]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=258908 CXL13_RS15245 WP_001202375.1 2927739..2928344(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Tennessee strain PIR00537]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTATTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment