Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DP112_RS00215 Genome accession   NZ_CP030125
Coordinates   28709..29491 (+) Length   260 a.a.
NCBI ID   WP_114866075.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23709..34491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS00195 (DP112_00195) mreD 24530..25045 (+) 516 WP_024385106.1 rod shape-determining protein MreD -
  DP112_RS00200 (DP112_00200) - 25130..26386 (+) 1257 WP_044683398.1 CHAP domain-containing protein -
  DP112_RS00205 (DP112_00205) - 26489..27457 (+) 969 WP_002935337.1 ribose-phosphate diphosphokinase -
  DP112_RS00210 (DP112_00210) - 27544..28722 (+) 1179 WP_114866074.1 pyridoxal phosphate-dependent aminotransferase -
  DP112_RS00215 (DP112_00215) recO 28709..29491 (+) 783 WP_114866075.1 DNA repair protein RecO Machinery gene
  DP112_RS00220 (DP112_00220) plsX 29488..30495 (+) 1008 WP_114866076.1 phosphate acyltransferase PlsX -
  DP112_RS00225 (DP112_00225) - 30488..30736 (+) 249 WP_105136227.1 phosphopantetheine-binding protein -
  DP112_RS00230 (DP112_00230) purC 30854..31561 (+) 708 WP_105136228.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30495.03 Da        Isoelectric Point: 5.4193

>NTDB_id=258900 DP112_RS00215 WP_114866075.1 28709..29491(+) (recO) [Streptococcus suis strain HA1003]
MERIETRGLVLYNRNFREDDKLVKIFTEKVGKRMFFVKHASKSKLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEILTNIFEIQLLGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRLFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=258900 DP112_RS00215 WP_114866075.1 28709..29491(+) (recO) [Streptococcus suis strain HA1003]
ATGGAACGAATTGAAACTAGGGGATTAGTCCTTTACAATCGGAATTTTCGAGAAGATGACAAGCTGGTCAAGATTTTTAC
GGAGAAGGTTGGCAAGCGAATGTTTTTCGTGAAACATGCCTCTAAGTCCAAGCTAGTAGCTTCTATCCAACCTTTGACCT
ATGCGGATTTTATCGTTAAAATCAATGATGATGGTCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCATTTAAGAAT
ATTAACGGCGATATTTTCAAGCTCAGTTATGCCACCTATATCTTGGCCTTGGCAGATGCGGCCTTGCAGGACAAGGTTTA
TGATCCAGCCCTCTTTGCATTTTTGGTCAAGACCTTAGATTTGATGGAGTCGGGTTTGGACTATGAAATTTTGACCAATA
TCTTTGAAATTCAGCTATTGGGTCGATTTGGGATCAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGCCTG
CCTTTTGACTATTCCTACAAGTACAGCGGTGTCTTGTGTCCGCAACACTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCCAATGTTCCCTATCTACTTGATCAATTTCAGGCTATTTCCTTTGATGAGCTGGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGCTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

69.721

96.538

0.673