Detailed information
Bioinformatically predicted
Overview
| Name | pilV | Type | Machinery gene |
| Locus tag | DGEO_RS12990 | Genome accession | NC_008025 |
| Coordinates | 2146607..2146996 (+) | Length | 129 a.a. |
| NCBI ID | WP_011531158.1 | Uniprot ID | - |
| Organism | Deinococcus geothermalis DSM 11300 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2141607..2151996
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DGEO_RS12970 (Dgeo_2034) | - | 2141965..2142678 (-) | 714 | WP_011531154.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| DGEO_RS12975 (Dgeo_2035) | - | 2142725..2142931 (-) | 207 | WP_041221380.1 | hypothetical protein | - |
| DGEO_RS12980 (Dgeo_2036) | - | 2143015..2143701 (-) | 687 | WP_011531156.1 | NUDIX domain-containing protein | - |
| DGEO_RS12985 (Dgeo_2037) | dnaB | 2143701..2146250 (-) | 2550 | WP_011531157.1 | replicative DNA helicase | - |
| DGEO_RS12990 (Dgeo_2038) | pilV | 2146607..2146996 (+) | 390 | WP_011531158.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| DGEO_RS12995 (Dgeo_2039) | - | 2147287..2148447 (+) | 1161 | WP_198008950.1 | O-antigen ligase family protein | - |
| DGEO_RS13000 (Dgeo_2040) | - | 2148573..2149139 (+) | 567 | WP_011531160.1 | DUF1802 family protein | - |
| DGEO_RS13005 (Dgeo_2041) | - | 2149202..2149672 (-) | 471 | WP_011531161.1 | hypothetical protein | - |
| DGEO_RS13010 (Dgeo_2042) | - | 2149851..2150621 (+) | 771 | WP_011531162.1 | class I SAM-dependent methyltransferase | - |
| DGEO_RS13015 (Dgeo_2043) | - | 2150600..2151598 (+) | 999 | WP_232220860.1 | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase | - |
| DGEO_RS13020 (Dgeo_2044) | - | 2151658..2151888 (+) | 231 | WP_011531164.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 129 a.a. Molecular weight: 13430.25 Da Isoelectric Point: 9.0340
>NTDB_id=25890 DGEO_RS12990 WP_011531158.1 2146607..2146996(+) (pilV) [Deinococcus geothermalis DSM 11300]
MKNGTQGFTLIELLIVIAIIGILAAVLIPNLLNARKSANESAAQSLLRNAVTAAESYRTSSGTYLNTATDCTNANVLNIT
SYPSSVTACKVQQTANGTYGYVTASTGKSFQFDGTTIKQGTAAMPSSMP
MKNGTQGFTLIELLIVIAIIGILAAVLIPNLLNARKSANESAAQSLLRNAVTAAESYRTSSGTYLNTATDCTNANVLNIT
SYPSSVTACKVQQTANGTYGYVTASTGKSFQFDGTTIKQGTAAMPSSMP
Nucleotide
Download Length: 390 bp
>NTDB_id=25890 DGEO_RS12990 WP_011531158.1 2146607..2146996(+) (pilV) [Deinococcus geothermalis DSM 11300]
ATGAAGAACGGAACCCAAGGCTTTACCCTCATCGAGCTGCTGATCGTGATCGCGATCATCGGGATTCTGGCGGCGGTGCT
GATCCCGAACCTGCTGAACGCCCGCAAGTCGGCGAACGAGAGCGCCGCCCAAAGCCTGCTGCGCAACGCCGTGACGGCGG
CCGAGTCGTACCGCACGAGCAGTGGCACATATCTCAATACGGCGACGGACTGCACCAACGCCAACGTCCTCAACATCACT
TCCTACCCCAGCAGCGTGACCGCCTGTAAGGTTCAGCAGACCGCCAACGGTACCTACGGCTATGTCACGGCCAGCACGGG
CAAGAGCTTCCAGTTTGATGGCACGACCATTAAGCAAGGTACGGCGGCGATGCCCAGCAGCATGCCCTAA
ATGAAGAACGGAACCCAAGGCTTTACCCTCATCGAGCTGCTGATCGTGATCGCGATCATCGGGATTCTGGCGGCGGTGCT
GATCCCGAACCTGCTGAACGCCCGCAAGTCGGCGAACGAGAGCGCCGCCCAAAGCCTGCTGCGCAACGCCGTGACGGCGG
CCGAGTCGTACCGCACGAGCAGTGGCACATATCTCAATACGGCGACGGACTGCACCAACGCCAACGTCCTCAACATCACT
TCCTACCCCAGCAGCGTGACCGCCTGTAAGGTTCAGCAGACCGCCAACGGTACCTACGGCTATGTCACGGCCAGCACGGG
CAAGAGCTTCCAGTTTGATGGCACGACCATTAAGCAAGGTACGGCGGCGATGCCCAGCAGCATGCCCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilV | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
53.125 |
99.225 |
0.527 |
| pilA/pilA4 | Thermus thermophilus HB27 |
40.441 |
100 |
0.426 |