Detailed information
Bioinformatically predicted
Overview
| Name | comC | Type | Machinery gene |
| Locus tag | CXB69_RS06315 | Genome accession | NZ_CP025206 |
| Coordinates | 1281864..1282553 (-) | Length | 229 a.a. |
| NCBI ID | WP_025015997.1 | Uniprot ID | A0AAF0KA01 |
| Organism | Latilactobacillus sakei strain WiKim0074 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1276864..1287553
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CXB69_RS06305 (CXB69_06295) | rpoC | 1277470..1281114 (+) | 3645 | WP_035147345.1 | DNA-directed RNA polymerase subunit beta' | - |
| CXB69_RS06310 (CXB69_06300) | - | 1281288..1281860 (+) | 573 | WP_025015998.1 | isochorismatase family protein | - |
| CXB69_RS06315 (CXB69_06305) | comC | 1281864..1282553 (-) | 690 | WP_025015997.1 | prepilin peptidase | Machinery gene |
| CXB69_RS06320 (CXB69_06310) | rpsL | 1282834..1283247 (+) | 414 | WP_004270179.1 | 30S ribosomal protein S12 | - |
| CXB69_RS06325 (CXB69_06315) | rpsG | 1283337..1283807 (+) | 471 | WP_004270185.1 | 30S ribosomal protein S7 | - |
| CXB69_RS06330 (CXB69_06320) | fusA | 1283903..1285990 (+) | 2088 | WP_016265721.1 | elongation factor G | - |
| CXB69_RS06335 (CXB69_06325) | - | 1286560..1287111 (-) | 552 | WP_025015996.1 | cysteine hydrolase family protein | - |
Sequence
Protein
Download Length: 229 a.a. Molecular weight: 26178.49 Da Isoelectric Point: 7.2085
>NTDB_id=258815 CXB69_RS06315 WP_025015997.1 1281864..1282553(-) (comC) [Latilactobacillus sakei strain WiKim0074]
MLLYLIIFYSGACCASFLTVCAWRLPIEKSIITPRSHCDCCQQPLAWHDLLPLFSYLYLHGHCRTCHAQIKPTFLFSELI
GGLLACFIFSESLSWDLAYLLVILFYISLVDLFYYILYPIPLFASLVPLFYLYWPQNHWLGAIVFCCGLLLTTYWASGFG
FGDVELLTILTLWVGLESVLRILLAACLICILFQGIKKIWPSPKQATRQIPFIPYISMGVVILLLQTPQ
MLLYLIIFYSGACCASFLTVCAWRLPIEKSIITPRSHCDCCQQPLAWHDLLPLFSYLYLHGHCRTCHAQIKPTFLFSELI
GGLLACFIFSESLSWDLAYLLVILFYISLVDLFYYILYPIPLFASLVPLFYLYWPQNHWLGAIVFCCGLLLTTYWASGFG
FGDVELLTILTLWVGLESVLRILLAACLICILFQGIKKIWPSPKQATRQIPFIPYISMGVVILLLQTPQ
Nucleotide
Download Length: 690 bp
>NTDB_id=258815 CXB69_RS06315 WP_025015997.1 1281864..1282553(-) (comC) [Latilactobacillus sakei strain WiKim0074]
ATGTTACTTTATTTAATCATCTTTTATAGCGGTGCTTGTTGCGCCTCATTTCTAACCGTTTGCGCCTGGCGCTTACCCAT
CGAAAAGTCCATTATCACACCACGTTCGCACTGCGATTGCTGTCAGCAACCACTGGCTTGGCATGATTTATTACCACTAT
TCAGCTACCTATACTTACATGGCCACTGCCGCACTTGTCATGCTCAGATTAAGCCCACTTTTTTATTCAGCGAACTAATT
GGTGGTCTATTGGCCTGCTTCATTTTTAGCGAATCCCTTTCTTGGGACCTCGCTTATTTACTCGTGATTCTCTTTTATAT
CAGTCTCGTTGACCTCTTCTACTATATTCTCTATCCAATCCCCTTATTCGCATCACTGGTGCCCCTCTTTTATTTGTATT
GGCCACAGAATCATTGGCTAGGAGCCATCGTCTTTTGCTGCGGGCTGTTGCTCACCACTTACTGGGCGTCTGGTTTTGGC
TTTGGTGATGTCGAGTTACTCACTATCCTGACGCTCTGGGTGGGTCTTGAATCCGTTTTACGAATTCTCTTGGCGGCCTG
TCTAATCTGTATTCTATTTCAAGGCATCAAAAAAATCTGGCCATCGCCTAAACAAGCGACGCGCCAGATTCCGTTTATCC
CCTATATATCGATGGGTGTGGTGATACTACTCCTACAAACACCACAATAA
ATGTTACTTTATTTAATCATCTTTTATAGCGGTGCTTGTTGCGCCTCATTTCTAACCGTTTGCGCCTGGCGCTTACCCAT
CGAAAAGTCCATTATCACACCACGTTCGCACTGCGATTGCTGTCAGCAACCACTGGCTTGGCATGATTTATTACCACTAT
TCAGCTACCTATACTTACATGGCCACTGCCGCACTTGTCATGCTCAGATTAAGCCCACTTTTTTATTCAGCGAACTAATT
GGTGGTCTATTGGCCTGCTTCATTTTTAGCGAATCCCTTTCTTGGGACCTCGCTTATTTACTCGTGATTCTCTTTTATAT
CAGTCTCGTTGACCTCTTCTACTATATTCTCTATCCAATCCCCTTATTCGCATCACTGGTGCCCCTCTTTTATTTGTATT
GGCCACAGAATCATTGGCTAGGAGCCATCGTCTTTTGCTGCGGGCTGTTGCTCACCACTTACTGGGCGTCTGGTTTTGGC
TTTGGTGATGTCGAGTTACTCACTATCCTGACGCTCTGGGTGGGTCTTGAATCCGTTTTACGAATTCTCTTGGCGGCCTG
TCTAATCTGTATTCTATTTCAAGGCATCAAAAAAATCTGGCCATCGCCTAAACAAGCGACGCGCCAGATTCCGTTTATCC
CCTATATATCGATGGGTGTGGTGATACTACTCCTACAAACACCACAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comC | Latilactobacillus sakei subsp. sakei 23K |
98.69 |
100 |
0.987 |