Detailed information NTG0025881

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: DGEO_RS06500
• Genome accession: NC_008025
• Coordinates: 821220..822440 (-)
• Length: 406 a.a.
• NCBI ID: WP_011529900.1
• Uniprot ID: A0A4R5GEM7
• Organism: Deinococcus geothermalis DSM 11300
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 816220..827440

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DGEO_RS06485 (Dgeo_0754)	-	817036..819123 (+)	2088	WP_011529897.1	3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein	-
DGEO_RS06490 (Dgeo_0755)	-	819277..820458 (+)	1182	WP_011529898.1	acetyl-CoA C-acyltransferase	-
DGEO_RS06495 (Dgeo_0756)	-	820615..821076 (+)	462	WP_011529899.1	arsenate reductase ArsC	-
DGEO_RS06500 (Dgeo_0757)	pilC	821220..822440 (-)	1221	WP_011529900.1	type II secretion system F family protein	Machinery gene
DGEO_RS06505 (Dgeo_0758)	-	822515..823141 (+)	627	WP_011529901.1	L-threonylcarbamoyladenylate synthase	-
DGEO_RS06510 (Dgeo_0759)	scpB	823138..823668 (+)	531	WP_011529902.1	SMC-Scp complex subunit ScpB	-
DGEO_RS06515 (Dgeo_0760)	gatA	823702..825153 (+)	1452	WP_011529903.1	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	-
DGEO_RS06520 (Dgeo_0761)	truB	825177..826115 (-)	939	WP_011529904.1	tRNA pseudouridine(55) synthase TruB	-
DGEO_RS06525 (Dgeo_0762)	-	826242..826613 (+)	372	WP_041221018.1	hypothetical protein	-
DGEO_RS06530 (Dgeo_0763)	-	826610..827371 (+)	762	WP_011529906.1	pseudouridine synthase	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 44103.07 Da
• Isoelectric Point: 9.9180

>NTDB_id=25881 DGEO_RS06500 WP_011529900.1 821220..822440(-) (pilC) [Deinococcus geothermalis DSM 11300]
MPVYEYRVRDRSGKVLKSQMEAETAAQVRDALRAKNLLIVEIKPPKTGLNADVKIPGLSDRPPGLKQVAIFSKQLATLIN
AGVPLVQALAILQRQIENKTFQNIIKSIRTDVESGTPLSEALVKHPKVFNRLYINLVRAGETSGTLDSILERIAAFQEKE
LGLRGKLKSALTYPVVVLVFAIGITYFLLTTIVPQFAGILAQLNAPLPLITRALMAVSDFLQHSGLLILVFVAVLVFAYR
WFYKTPKGRHVIDDIKLRLPVFGNLLQKSAISSFARTFGLLIGSGVNIIESLEITKGTANNAIVEDTIENAKNVVMVGEP
MSASLATSKVFPPMVVSMVAIGEETGSLDSMLVKVGDFYDREVDEAVASLTAAIEPLMIVFLGGIVGTIVAGMFLPMFSI
IGQLSK

Nucleotide

• Length: 1221 bp

>NTDB_id=25881 DGEO_RS06500 WP_011529900.1 821220..822440(-) (pilC) [Deinococcus geothermalis DSM 11300]
ATGCCGGTCTACGAATACCGCGTCCGGGACCGCTCCGGAAAAGTCCTGAAGTCCCAGATGGAGGCCGAGACCGCCGCCCA
GGTCCGCGACGCCCTACGCGCCAAGAATCTGCTGATCGTCGAGATCAAGCCACCCAAAACCGGGCTCAATGCCGACGTCA
AGATCCCCGGCCTCTCAGATCGTCCCCCCGGACTCAAGCAGGTGGCGATCTTTAGCAAGCAGCTCGCCACGCTGATCAAT
GCGGGCGTGCCGCTGGTGCAGGCACTAGCCATCCTGCAACGCCAAATCGAGAACAAAACCTTCCAGAACATCATCAAGAG
TATCCGCACCGACGTGGAGAGCGGCACCCCCCTGAGCGAGGCCCTCGTCAAACATCCCAAAGTCTTTAACCGGCTGTACA
TCAACCTGGTGCGGGCGGGCGAGACGAGCGGCACGCTGGACAGCATCCTGGAGCGCATCGCCGCCTTTCAGGAAAAGGAG
CTCGGCCTGCGCGGCAAGCTCAAGAGCGCCCTGACCTACCCGGTGGTCGTGCTGGTCTTTGCCATCGGAATTACGTACTT
TCTGCTCACGACCATCGTGCCGCAGTTTGCCGGCATTCTGGCGCAGCTCAACGCACCGCTTCCCTTGATTACTCGGGCGC
TGATGGCCGTCTCCGACTTCCTCCAGCACTCCGGGCTGCTGATCTTGGTCTTTGTGGCCGTGCTGGTCTTTGCCTACCGC
TGGTTCTACAAGACACCGAAGGGACGGCACGTCATCGACGACATCAAGCTGCGGCTGCCGGTCTTCGGCAACCTGCTGCA
AAAAAGCGCAATCAGCTCGTTTGCTCGCACGTTCGGCCTGCTGATCGGCAGCGGCGTCAACATCATTGAGAGTCTGGAAA
TCACCAAGGGCACCGCGAACAACGCGATTGTCGAGGACACCATTGAGAACGCCAAGAACGTGGTGATGGTCGGCGAACCG
ATGAGCGCCAGCCTCGCGACCAGCAAAGTGTTTCCGCCCATGGTCGTCAGCATGGTCGCCATCGGTGAGGAAACCGGCTC
GCTTGATAGCATGCTGGTTAAGGTCGGTGACTTCTACGACCGTGAGGTGGATGAGGCCGTCGCCAGCCTGACTGCCGCCA
TCGAACCGCTGATGATTGTGTTCCTAGGCGGAATCGTGGGCACGATCGTCGCGGGCATGTTTTTGCCGATGTTCAGCATC
ATCGGGCAGCTCAGCAAGTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (274-396)

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

3D structure

• AlphaFold DB: A0A4R5GEM7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	62.315	100	0.623