Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DP111_RS00215 Genome accession   NZ_CP030124
Coordinates   28930..29712 (+) Length   260 a.a.
NCBI ID   WP_024394840.1    Uniprot ID   -
Organism   Streptococcus suis strain SH1510     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23930..34712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP111_RS00195 (DP111_00195) mreD 24763..25266 (+) 504 WP_228475524.1 rod shape-determining protein MreD -
  DP111_RS00200 (DP111_00200) - 25351..26607 (+) 1257 WP_024394838.1 CHAP domain-containing protein -
  DP111_RS00205 (DP111_00205) - 26710..27678 (+) 969 WP_002935337.1 ribose-phosphate diphosphokinase -
  DP111_RS00210 (DP111_00210) - 27765..28943 (+) 1179 WP_024394839.1 pyridoxal phosphate-dependent aminotransferase -
  DP111_RS00215 (DP111_00215) recO 28930..29712 (+) 783 WP_024394840.1 DNA repair protein RecO Machinery gene
  DP111_RS00220 (DP111_00220) plsX 29709..30716 (+) 1008 WP_014637253.1 phosphate acyltransferase PlsX -
  DP111_RS00225 (DP111_00225) - 30709..30957 (+) 249 WP_014637254.1 phosphopantetheine-binding protein -
  DP111_RS00230 (DP111_00230) purC 31075..31782 (+) 708 WP_024394841.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30514.98 Da        Isoelectric Point: 5.4193

>NTDB_id=258803 DP111_RS00215 WP_024394840.1 28930..29712(+) (recO) [Streptococcus suis strain SH1510]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSRLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRFFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=258803 DP111_RS00215 WP_024394840.1 28930..29712(+) (recO) [Streptococcus suis strain SH1510]
ATGGAACGAATTGAAACCAGGGGATTAGTCCTATATAATCGGAATTTTCGAGAGGATGACAAGCTGGTCAAGATTTTTAC
GGAGAAGGCTGGCAAGCGAATGTTTTTCGTGAAACATGCCTCTAAATCCAGGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGCGGATTTTATCGTTAAAATCAATGATGATGGTCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCCTTTAAGAAT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACCTATATCTTGGCCTTGGCCGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCTCTCTTTGCTTTTTTGGTCAAGACCTTGGACTTGATGGAGTCAGGTTTGGACTACGAAGTTCTGACCAATA
TCTTTGAAATTCAGCTCTTGGGTCGATTTGGAATCAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGCTTG
CCTTTTGACTATTCCTACAAGTACAGCGGTGTCTTGTGTCCGCAACACTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCCAATGTTCCCTATCTACTTGATCAATTTCAGGCTATTTCCTTTGATGAGCTAGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGTTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

69.323

96.538

0.669