Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DPQ29_RS22845 Genome accession   NZ_CP030111
Coordinates   4405601..4406077 (+) Length   158 a.a.
NCBI ID   WP_001186786.1    Uniprot ID   -
Organism   Escherichia coli strain MCJCHV-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4400601..4411077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPQ29_RS22815 (DPQ29_22810) - 4401270..4402154 (+) 885 WP_001116801.1 YfjP family GTPase -
  DPQ29_RS22820 (DPQ29_22815) - 4402357..4403037 (+) 681 WP_001282919.1 WYL domain-containing protein -
  DPQ29_RS22825 (DPQ29_22820) - 4403185..4403862 (+) 678 WP_001097301.1 hypothetical protein -
  DPQ29_RS22830 (DPQ29_22825) - 4403868..4404101 (+) 234 WP_001278283.1 DUF905 family protein -
  DPQ29_RS22835 (DPQ29_22830) - 4404191..4405009 (+) 819 WP_001773857.1 DUF932 domain-containing protein -
  DPQ29_RS22840 (DPQ29_22835) - 4405100..4405585 (+) 486 WP_000214398.1 antirestriction protein -
  DPQ29_RS22845 (DPQ29_22840) radC 4405601..4406077 (+) 477 WP_001186786.1 RadC family protein Machinery gene
  DPQ29_RS22850 (DPQ29_22845) - 4406140..4406361 (+) 222 WP_000692311.1 DUF987 domain-containing protein -
  DPQ29_RS22855 (DPQ29_22850) - 4406524..4406892 (+) 369 WP_001540478.1 type IV toxin-antitoxin system YeeU family antitoxin -
  DPQ29_RS22860 (DPQ29_22855) - 4406982..4407356 (+) 375 WP_000854753.1 TA system toxin CbtA family protein -
  DPQ29_RS22865 (DPQ29_22860) - 4407353..4407841 (+) 489 WP_000777545.1 DUF5983 family protein -
  DPQ29_RS22870 (DPQ29_22865) - 4407853..4408050 (+) 198 WP_000839281.1 DUF957 domain-containing protein -
  DPQ29_RS22875 (DPQ29_22870) - 4408147..4408716 (+) 570 WP_001560692.1 DUF4942 domain-containing protein -
  DPQ29_RS27030 - 4409094..4409205 (+) 112 Protein_4232 integrase -
  DPQ29_RS22885 (DPQ29_22880) cadC 4409465..4411003 (+) 1539 WP_001187191.1 lysine decarboxylation/transport transcriptional activator CadC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17776.44 Da        Isoelectric Point: 7.6152

>NTDB_id=258780 DPQ29_RS22845 WP_001186786.1 4405601..4406077(+) (radC) [Escherichia coli strain MCJCHV-1]
MQQLSFLPGEMTTRERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=258780 DPQ29_RS22845 WP_001186786.1 4405601..4406077(+) (radC) [Escherichia coli strain MCJCHV-1]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392