Detailed information    

insolico Bioinformatically predicted

Overview

Name   ddrB   Type   Machinery gene
Locus tag   DGEO_RS04090 Genome accession   NC_008025
Coordinates   287099..287635 (-) Length   178 a.a.
NCBI ID   WP_011529443.1    Uniprot ID   Q1J1N6
Organism   Deinococcus geothermalis DSM 11300     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 282099..292635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGEO_RS04055 (Dgeo_0288) - 282755..283237 (-) 483 WP_011529436.1 GNAT family N-acetyltransferase -
  DGEO_RS04060 (Dgeo_0289) - 283418..283909 (-) 492 WP_011529437.1 DUF3809 domain-containing protein -
  DGEO_RS04065 (Dgeo_0290) - 283935..284174 (-) 240 WP_011529438.1 DUF3248 domain-containing protein -
  DGEO_RS04070 - 284219..284494 (+) 276 WP_041221500.1 hypothetical protein -
  DGEO_RS04075 (Dgeo_0292) rocF 284614..285513 (-) 900 WP_011529440.1 arginase -
  DGEO_RS04080 (Dgeo_0293) - 285681..286319 (+) 639 WP_049782895.1 metallophosphoesterase -
  DGEO_RS04085 (Dgeo_0294) - 286616..287056 (+) 441 WP_011529442.1 hypothetical protein -
  DGEO_RS04090 (Dgeo_0295) ddrB 287099..287635 (-) 537 WP_011529443.1 single-stranded DNA-binding protein Machinery gene
  DGEO_RS04095 (Dgeo_0296) - 287722..288804 (+) 1083 WP_049783000.1 DUF4357 domain-containing protein -
  DGEO_RS04100 (Dgeo_0297) paaI 288792..289163 (-) 372 WP_011529445.1 hydroxyphenylacetyl-CoA thioesterase PaaI -
  DGEO_RS04105 (Dgeo_0298) - 289216..290289 (+) 1074 WP_011529446.1 M42 family metallopeptidase -
  DGEO_RS04110 (Dgeo_0299) - 290273..291022 (+) 750 WP_011529447.1 NAD-dependent deacylase -
  DGEO_RS04120 (Dgeo_0300) ribD 291371..292435 (+) 1065 WP_041221505.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19866.25 Da        Isoelectric Point: 6.8875

>NTDB_id=25878 DGEO_RS04090 WP_011529443.1 287099..287635(-) (ddrB) [Deinococcus geothermalis DSM 11300]
MLHIEFITDLGAKVTVDVESADKLLDVQRQYGRLGWTSGEVPVGGYQFPLENEPDFDWSLIGARKWTNPEGEEMILHRGH
AYRRRELEAVDSRKMKLPAAVKYSRGAKNTDPEHVREKADGEFEYVTLAIFRGGKRQERYAVPGSNRPQAGAPARSAATR
AQGARPGAVAVQDEETPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=25878 DGEO_RS04090 WP_011529443.1 287099..287635(-) (ddrB) [Deinococcus geothermalis DSM 11300]
ATGCTGCACATCGAGTTCATCACGGACCTGGGAGCCAAAGTCACGGTGGATGTGGAGAGCGCCGACAAGCTGCTCGACGT
TCAGCGGCAGTATGGCCGGCTGGGATGGACCAGCGGAGAAGTCCCTGTCGGCGGGTACCAGTTCCCGCTGGAGAACGAGC
CTGACTTCGACTGGTCATTGATCGGGGCCAGAAAATGGACCAACCCGGAAGGCGAGGAGATGATCCTGCACCGCGGCCAC
GCCTACCGCCGCCGCGAGCTGGAGGCCGTGGACAGCCGCAAGATGAAGCTTCCCGCCGCTGTCAAGTACTCCAGAGGTGC
CAAAAATACCGACCCCGAGCACGTCCGCGAGAAGGCCGACGGCGAGTTCGAGTACGTCACCCTAGCGATTTTCCGCGGCG
GCAAGCGCCAGGAACGCTATGCCGTGCCCGGCAGCAACCGCCCGCAGGCCGGCGCCCCCGCCCGCTCGGCAGCGACGCGC
GCCCAGGGTGCCCGGCCGGGTGCAGTTGCGGTGCAGGACGAGGAAACGCCGTTCTGA

Domains

Predicted by InterproScan.

DdrB-like protein (DdrB)

(3-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4EXW

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ddrB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

69.681

100

0.736

Multiple sequence alignment