Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   CXB46_RS10530 Genome accession   NZ_CP025202
Coordinates   2109244..2111049 (-) Length   601 a.a.
NCBI ID   WP_045553950.1    Uniprot ID   -
Organism   Listeria innocua strain WSLC_2021_parental     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2104244..2116049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXB46_RS10510 (CXB46_10655) isdE 2105132..2106004 (-) 873 WP_112120276.1 heme ABC transporter substrate-binding protein IsdE -
  CXB46_RS10515 (CXB46_10660) - 2106091..2107812 (-) 1722 WP_003763504.1 NEAT domain-containing protein -
  CXB46_RS10520 (CXB46_10665) isdC 2107825..2108451 (-) 627 WP_003763505.1 heme uptake protein IsdC -
  CXB46_RS10525 (CXB46_10670) - 2108676..2108933 (-) 258 WP_112120275.1 DUF3116 family protein -
  CXB46_RS10530 (CXB46_10675) pepF 2109244..2111049 (-) 1806 WP_045553950.1 oligoendopeptidase F Regulator
  CXB46_RS10535 (CXB46_10680) - 2111122..2112237 (-) 1116 WP_112120274.1 competence protein CoiA -
  CXB46_RS10540 (CXB46_10685) mecA 2112364..2113017 (-) 654 WP_003763512.1 adaptor protein MecA -
  CXB46_RS10545 (CXB46_10690) spxA 2113239..2113634 (-) 396 WP_003720569.1 transcriptional regulator SpxA -
  CXB46_RS10550 (CXB46_10695) - 2113954..2114922 (-) 969 WP_003763514.1 ABC transporter ATP-binding protein -
  CXB46_RS10555 (CXB46_10700) - 2114919..2115995 (-) 1077 WP_003722316.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68603.81 Da        Isoelectric Point: 4.6584

>NTDB_id=258779 CXB46_RS10530 WP_045553950.1 2109244..2111049(-) (pepF) [Listeria innocua strain WSLC_2021_parental]
MSKTNALPLREEVPENLTWDLTTIYPNDEAWEKAFTELQKITEESDQFKGRLAESSQTLYEALQFRDKAYDLISNLYVYA
HLKMDQDTANAKYQGLHSRAGSLVTKLMSALSYYDPEILAMDESVLKQFLNENKDLQLYAHLLEELNLSRPYILSEKEEA
LLANAGEVLGSSSNTFNTLNNADMKFPTIKDENGEEIEITHGRYGKLLESNDPRVRKDAFLGVYSVYEGLKNTLASTLNG
QVKKSNFYASTRGYKSAREAALSGNHIPETVYDSLLKSVNNNASLLHRYVKLRKELLGLEELHMYDLYTPLSDDVNLEFT
YEEAKEIVLEALKPLGDEYQSILKEAFDSRWIDVMENKGKRSGAYSSGSYSTNPYILLNWQDNINNVYTLAHELGHSVHS
YYTRKNQPFVYGDYSIFLAEVASTTNENLLTDYLLKKYDDPKVRAYLLNHYLDGFKGTVFRQTQFAEFEHAIHQADQEGV
ALTADYLTETYFDINKKYYGDAIVYDAEIGYEWSRIPHFYMNYYVFQYATGFSAASALSAKILTEGQEAVTAYIDFLKAG
SSDYPIEVLKKAGVDMATPNPVDDALKVFEQRLDELEKLVK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=258779 CXB46_RS10530 WP_045553950.1 2109244..2111049(-) (pepF) [Listeria innocua strain WSLC_2021_parental]
TTGAGTAAAACGAATGCATTACCTTTAAGAGAAGAAGTTCCAGAAAATTTAACTTGGGATTTGACTACTATTTATCCAAA
TGATGAGGCTTGGGAAAAAGCCTTTACAGAATTACAAAAAATCACAGAAGAAAGCGATCAATTTAAAGGTCGTCTAGCGG
AAAGTAGCCAAACGCTTTATGAAGCACTACAATTTCGTGATAAAGCTTATGATTTAATTAGTAATTTATATGTTTATGCT
CATTTGAAAATGGACCAGGATACAGCTAATGCGAAATACCAAGGATTACATAGTCGGGCAGGAAGTTTAGTTACAAAACT
AATGTCTGCATTATCTTATTATGATCCTGAAATTTTAGCGATGGATGAGAGTGTTTTAAAACAATTTTTAAATGAAAATA
AAGATTTGCAACTATATGCACACTTATTAGAGGAATTAAACTTAAGCCGACCTTATATTTTAAGTGAAAAAGAAGAGGCA
TTATTAGCGAATGCTGGCGAAGTTTTGGGTAGTTCTTCTAATACGTTTAACACATTAAATAATGCGGACATGAAGTTCCC
TACAATTAAAGATGAAAATGGCGAAGAGATTGAAATCACGCATGGTCGTTATGGTAAGTTGTTAGAAAGTAATGACCCGC
GTGTTCGTAAAGACGCGTTTCTTGGTGTGTATTCTGTTTATGAAGGATTAAAGAATACCTTAGCATCTACTTTAAATGGG
CAAGTGAAAAAATCTAATTTTTATGCTTCTACACGTGGATATAAGTCCGCTCGTGAGGCAGCACTTTCAGGAAATCATAT
TCCGGAGACAGTTTATGACTCTTTATTAAAATCAGTAAACAATAATGCTAGTTTACTTCATCGCTATGTAAAATTACGTA
AAGAATTGCTTGGATTAGAAGAACTTCATATGTATGATCTTTATACACCGCTTTCTGATGATGTTAATTTGGAATTCACT
TATGAGGAAGCAAAAGAGATTGTCCTTGAAGCCTTGAAGCCACTTGGGGATGAATATCAATCGATTTTAAAAGAAGCTTT
TGATAGCCGCTGGATTGATGTGATGGAAAATAAAGGTAAACGAAGCGGGGCATACTCTTCTGGTTCATATAGTACAAATC
CATATATTTTATTGAATTGGCAAGATAATATTAATAATGTTTATACGCTAGCTCATGAACTTGGACATAGTGTTCACAGT
TACTATACAAGGAAGAATCAACCATTTGTTTATGGAGATTATTCGATTTTCTTAGCAGAAGTTGCTTCTACGACTAATGA
AAATTTACTGACGGACTATCTTTTGAAAAAATATGATGATCCGAAAGTACGCGCTTATTTGTTAAATCATTATTTAGATG
GATTTAAAGGAACTGTATTCCGTCAAACGCAATTTGCTGAGTTTGAGCATGCTATTCATCAAGCAGATCAAGAAGGAGTT
GCTTTAACAGCTGATTATTTAACAGAAACTTACTTTGATATTAATAAGAAATATTATGGTGATGCAATTGTTTATGATGC
TGAAATTGGTTATGAATGGTCTCGTATTCCACATTTTTACATGAACTATTATGTTTTCCAATATGCGACTGGGTTTTCGG
CAGCATCAGCTTTAAGTGCGAAAATTTTAACTGAAGGTCAAGAGGCGGTAACAGCTTATATTGACTTTTTGAAAGCAGGA
AGTTCTGATTATCCAATTGAGGTGTTGAAAAAAGCAGGAGTTGATATGGCAACACCGAACCCTGTGGATGACGCTTTAAA
AGTTTTTGAACAAAGATTAGATGAATTAGAAAAACTAGTCAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-586)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.351

98.502

0.506

Multiple sequence alignment