Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DPQ29_RS21540 Genome accession   NZ_CP030111
Coordinates   4169032..4169508 (-) Length   158 a.a.
NCBI ID   WP_001186775.1    Uniprot ID   A7ZVJ5
Organism   Escherichia coli strain MCJCHV-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4164032..4174508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPQ29_RS21510 (DPQ29_21505) - 4164233..4164874 (-) 642 WP_000439687.1 L-fuculose-phosphate aldolase -
  DPQ29_RS21515 (DPQ29_21510) mtnA 4164905..4166020 (-) 1116 WP_001022014.1 S-methyl-5-thioribose-1-phosphate isomerase -
  DPQ29_RS21520 (DPQ29_21515) mtnK 4166030..4167289 (-) 1260 WP_000132327.1 S-methyl-5-thioribose kinase -
  DPQ29_RS21525 (DPQ29_21520) - 4168029..4168127 (-) 99 Protein_3986 TA system toxin CbtA family protein -
  DPQ29_RS21530 (DPQ29_21525) - 4168217..4168585 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  DPQ29_RS21535 (DPQ29_21530) - 4168748..4168969 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  DPQ29_RS21540 (DPQ29_21535) radC 4169032..4169508 (-) 477 WP_001186775.1 RadC family protein Machinery gene
  DPQ29_RS21545 (DPQ29_21540) - 4169524..4169997 (-) 474 WP_001350782.1 antirestriction protein -
  DPQ29_RS21555 (DPQ29_21550) - 4170339..4171157 (-) 819 WP_001234655.1 DUF932 domain-containing protein -
  DPQ29_RS21565 (DPQ29_21560) - 4171275..4171470 (-) 196 Protein_3992 DUF905 family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17687.30 Da        Isoelectric Point: 7.1437

>NTDB_id=258778 DPQ29_RS21540 WP_001186775.1 4169032..4169508(-) (radC) [Escherichia coli strain MCJCHV-1]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=258778 DPQ29_RS21540 WP_001186775.1 4169032..4169508(-) (radC) [Escherichia coli strain MCJCHV-1]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZVJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399