Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DPQ29_RS18185 Genome accession   NZ_CP030111
Coordinates   3505673..3506278 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain MCJCHV-1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3500673..3511278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPQ29_RS18160 (DPQ29_18160) aes 3500827..3501795 (+) 969 WP_000801820.1 acetyl esterase -
  DPQ29_RS18165 (DPQ29_18165) hemH 3501770..3502732 (-) 963 WP_001250114.1 ferrochelatase -
  DPQ29_RS18170 (DPQ29_18170) adk 3502864..3503508 (-) 645 WP_001313630.1 adenylate kinase -
  DPQ29_RS18180 (DPQ29_18180) htpG 3503689..3505563 (-) 1875 WP_000678189.1 molecular chaperone HtpG -
  DPQ29_RS18185 (DPQ29_18185) recR 3505673..3506278 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  DPQ29_RS18190 (DPQ29_18190) ybaB 3506278..3506607 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  DPQ29_RS18195 (DPQ29_18195) dnaX 3506660..3508591 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  DPQ29_RS18200 (DPQ29_18200) apt 3508720..3509271 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  DPQ29_RS18210 (DPQ29_18210) ybaN 3509424..3509801 (-) 378 WP_001188900.1 DUF454 family protein -
  DPQ29_RS18215 (DPQ29_18215) priC 3509871..3510398 (+) 528 WP_000844854.1 primosomal replication protein N'' -
  DPQ29_RS18220 (DPQ29_18220) rsmS 3510412..3510573 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  DPQ29_RS26920 - 3510626..3510724 (-) 99 Protein_3370 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=258768 DPQ29_RS18185 WP_001195025.1 3505673..3506278(-) (recR) [Escherichia coli strain MCJCHV-1]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=258768 DPQ29_RS18185 WP_001195025.1 3505673..3506278(-) (recR) [Escherichia coli strain MCJCHV-1]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443