Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   CXB72_RS09490 Genome accession   NZ_CP025200
Coordinates   1905637..1907433 (+) Length   598 a.a.
NCBI ID   WP_125978882.1    Uniprot ID   -
Organism   Lactobacillus acidophilus strain YT1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1900637..1912433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXB72_RS09465 (CXB72_09485) - 1900791..1901561 (-) 771 WP_125978878.1 threonine/serine exporter family protein -
  CXB72_RS09470 (CXB72_09490) - 1901572..1903113 (-) 1542 WP_125978879.1 ABC-F family ATP-binding cassette domain-containing protein -
  CXB72_RS09475 (CXB72_09495) - 1903122..1903496 (-) 375 WP_003549816.1 hypothetical protein -
  CXB72_RS09480 (CXB72_09500) - 1903642..1904142 (+) 501 WP_125978880.1 GNAT family N-acetyltransferase -
  CXB72_RS09485 (CXB72_09505) - 1904195..1905469 (-) 1275 WP_125978881.1 LCP family protein -
  CXB72_RS09490 (CXB72_09510) pepF 1905637..1907433 (+) 1797 WP_125978882.1 oligoendopeptidase F Regulator
  CXB72_RS09495 (CXB72_09515) - 1907546..1907791 (+) 246 WP_225852599.1 hypothetical protein -
  CXB72_RS09500 (CXB72_09520) - 1908116..1909630 (-) 1515 WP_125978883.1 L-lactate permease -
  CXB72_RS09505 (CXB72_09525) - 1910044..1910409 (+) 366 WP_011254569.1 pyridoxamine 5'-phosphate oxidase family protein -
  CXB72_RS09510 (CXB72_09530) - 1910458..1911252 (-) 795 WP_015613417.1 metal ABC transporter permease -
  CXB72_RS09515 (CXB72_09535) - 1911252..1911899 (-) 648 WP_011254570.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 68217.07 Da        Isoelectric Point: 4.6238

>NTDB_id=258752 CXB72_RS09490 WP_125978882.1 1905637..1907433(+) (pepF) [Lactobacillus acidophilus strain YT1]
MAIPTRSEVPEELKWDLTRVFKTDEDWGAAFDNAKDEIEKLGDFKKILTKSGKDLYESLTQILAVKRQVENIYVYATMSS
DVDTSNSHYLGYVSHAQNLVNQFEAVTSFISPEILSIPADKFEQFKKDEPRLNDYAHYLETITNKRPHTLPAEEEKIIAD
ASDAMGVSENTFNVLTNSDMEYGYVQDDDGNMEQLSDGLYSLLIQSQNRDVRKGAFDTLYASYDQFQNSLASTLSGVVKK
HNYNAKVHKYDSARKAALAENNVPTKVYDTLIQEVDSHLDLLHRYVALRKKILGLKDLQMWDMYVPLTGKPALSYNFEEA
KEVAKKALAPLGEDYLKHVDYIFNNRVIDVVESKNKVTGAYSGGAYDTDPYELLNWENNIDSLYTLVHETGHSVHSWYTR
NSQPYVYGDYPIFVAEIASTTNENILTEYFLDHITDPKTRAFILNYYLDSFKGTLFRQTQFAVFEQFIHEADAKGEPLTA
DILDEVYGQLNQHYYGDSVEPGGDIALEWSRIPHFYYDFYVYQYATGFAAATALANKVVHGSEADRDAYLGFLKAGSSNY
PTEIMKHAGVDMTKPDYLEDAFKTFEKRLAEFESLIEK

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=258752 CXB72_RS09490 WP_125978882.1 1905637..1907433(+) (pepF) [Lactobacillus acidophilus strain YT1]
ATGGCAATTCCAACAAGAAGTGAAGTCCCAGAAGAATTAAAATGGGACTTAACCCGTGTTTTTAAGACAGATGAAGACTG
GGGAGCAGCCTTTGATAATGCAAAAGATGAAATAGAAAAATTAGGTGATTTTAAAAAAATCCTTACTAAATCTGGCAAAG
ACTTATATGAAAGCTTGACCCAAATTTTAGCAGTTAAACGTCAAGTAGAAAATATTTACGTTTATGCAACTATGTCTAGT
GATGTTGATACTTCAAATTCTCACTATTTAGGTTATGTAAGCCACGCACAAAATTTAGTTAACCAATTTGAGGCAGTAAC
TAGTTTTATCAGCCCAGAAATTCTGAGTATCCCTGCCGATAAGTTTGAACAATTCAAAAAGGATGAACCTCGTTTAAACG
ATTATGCTCACTATCTTGAGACAATCACTAATAAGCGTCCCCACACTTTACCTGCTGAAGAGGAAAAAATTATCGCAGAT
GCCAGTGATGCCATGGGCGTTTCAGAAAATACCTTTAATGTTTTAACTAATTCAGACATGGAATATGGCTACGTTCAAGA
TGACGATGGTAATATGGAACAATTGTCTGACGGTTTGTACTCACTTTTAATCCAATCACAAAACCGTGATGTCAGAAAAG
GCGCTTTTGATACGCTTTATGCAAGCTATGATCAATTCCAAAATTCACTTGCTTCTACGCTTTCCGGCGTTGTAAAGAAG
CACAATTATAACGCTAAAGTTCACAAGTATGATTCAGCTCGTAAAGCAGCTTTAGCTGAAAACAACGTACCTACCAAGGT
TTACGACACTTTGATTCAAGAAGTTGACTCCCATCTTGATTTACTTCACCGTTATGTAGCACTTCGGAAGAAAATTTTGG
GACTTAAAGATTTACAAATGTGGGACATGTACGTGCCACTAACTGGTAAGCCTGCTCTTTCATATAATTTTGAAGAAGCA
AAAGAAGTAGCTAAGAAAGCTTTAGCTCCACTTGGCGAAGATTACTTAAAGCATGTTGATTATATCTTTAATAATCGCGT
AATTGATGTAGTTGAATCAAAGAATAAAGTAACTGGCGCATATTCTGGCGGTGCTTATGATACAGATCCATATGAACTTT
TAAACTGGGAGAACAACATTGACTCCTTATATACTCTAGTTCACGAAACTGGTCACTCAGTTCACTCTTGGTACACTCGC
AATAGCCAACCTTACGTTTATGGGGATTATCCTATTTTCGTAGCAGAAATTGCTTCAACCACTAACGAAAATATTTTGAC
TGAATACTTCTTAGATCACATTACTGATCCTAAGACACGCGCATTTATTTTGAACTACTATCTTGATTCATTTAAGGGGA
CATTGTTCCGTCAAACCCAATTTGCGGTGTTTGAACAATTTATTCATGAAGCAGATGCTAAAGGTGAACCACTTACTGCT
GATATCTTGGATGAAGTTTATGGACAACTTAACCAACATTATTACGGTGACAGCGTTGAGCCAGGCGGCGATATTGCGCT
TGAATGGTCACGTATCCCGCACTTCTACTACGACTTTTACGTTTACCAATATGCAACAGGATTTGCGGCTGCAACAGCTC
TTGCCAACAAGGTGGTTCATGGTTCTGAAGCTGATAGGGATGCATATCTTGGTTTTCTTAAGGCTGGTTCAAGTAACTAT
CCAACCGAAATTATGAAGCATGCTGGCGTTGATATGACTAAGCCAGACTACTTGGAAGATGCATTTAAGACATTTGAAAA
ACGTTTAGCCGAATTTGAAAGTTTGATTGAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.01

99.331

0.507

Multiple sequence alignment