Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DPQ29_RS06010 Genome accession   NZ_CP030111
Coordinates   1188095..1188610 (+) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain MCJCHV-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1183095..1193610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPQ29_RS05965 (DPQ29_05965) csrA 1183950..1184135 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  DPQ29_RS05995 (DPQ29_05995) yqaB 1185325..1185891 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  DPQ29_RS06000 (DPQ29_06000) yqaA 1185888..1186316 (+) 429 WP_001287462.1 YqaA family protein -
  DPQ29_RS06005 (DPQ29_06005) gshA 1186389..1187945 (+) 1557 WP_001539417.1 glutamate--cysteine ligase -
  DPQ29_RS06010 (DPQ29_06010) luxS 1188095..1188610 (+) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  DPQ29_RS06015 (DPQ29_06015) tnpA 1188747..1189205 (-) 459 WP_000526113.1 IS200/IS605-like element IS200C family transposase -
  DPQ29_RS06025 (DPQ29_06025) emrB 1189385..1190923 (-) 1539 WP_001539415.1 multidrug efflux MFS transporter permease subunit EmrB -
  DPQ29_RS06030 (DPQ29_06030) emrA 1190940..1192112 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  DPQ29_RS06035 (DPQ29_06035) emrR 1192239..1192769 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  DPQ29_RS06040 (DPQ29_06040) ygaH 1192860..1193195 (-) 336 WP_000119749.1 L-valine transporter subunit YgaH -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=258741 DPQ29_RS06010 WP_001130208.1 1188095..1188610(+) (luxS) [Escherichia coli strain MCJCHV-1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=258741 DPQ29_RS06010 WP_001130208.1 1188095..1188610(+) (luxS) [Escherichia coli strain MCJCHV-1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCAAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737