Detailed information NTG0258738

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: DPQ29_RS05715
• Genome accession: NZ_CP030111
• Coordinates: 1131805..1132797 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MCJCHV-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1126805..1137797

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DPQ29_RS05685 (DPQ29_05685)	ispD	1126866..1127576 (+)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
DPQ29_RS05690 (DPQ29_05690)	ispF	1127576..1128055 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
DPQ29_RS05695 (DPQ29_05695)	truD	1128052..1129101 (+)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
DPQ29_RS05700 (DPQ29_05700)	surE	1129082..1129843 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
DPQ29_RS05705 (DPQ29_05705)	pcm	1129837..1130463 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
DPQ29_RS05710 (DPQ29_05710)	nlpD	1130648..1131742 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
DPQ29_RS05715 (DPQ29_05715)	rpoS	1131805..1132797 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
DPQ29_RS05720 (DPQ29_05720)	-	1132975..1133526 (-)	552	WP_001179442.1	flavodoxin family protein	-
DPQ29_RS05725 (DPQ29_05725)	-	1133751..1134794 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
DPQ29_RS05730 (DPQ29_05730)	ygbN	1134937..1136301 (-)	1365	WP_000104433.1	GntP family transporter	-
DPQ29_RS05735 (DPQ29_05735)	ygbM	1136390..1137166 (-)	777	WP_001539449.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=258738 DPQ29_RS05715 WP_000081550.1 1131805..1132797(+) (rpoS) [Escherichia coli strain MCJCHV-1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=258738 DPQ29_RS05715 WP_000081550.1 1131805..1132797(+) (rpoS) [Escherichia coli strain MCJCHV-1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715