Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DPQ29_RS00370 Genome accession   NZ_CP030111
Coordinates   74209..74877 (+) Length   222 a.a.
NCBI ID   WP_001540088.1    Uniprot ID   -
Organism   Escherichia coli strain MCJCHV-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 69209..79877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPQ29_RS00335 (DPQ29_00335) yicC 69228..70091 (-) 864 WP_000621332.1 YicC/YloC family endoribonuclease -
  DPQ29_RS00345 (DPQ29_00345) rph 70218..70934 (+) 717 WP_001247093.1 ribonuclease PH -
  DPQ29_RS00350 (DPQ29_00350) pyrE 71000..71641 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  DPQ29_RS00355 (DPQ29_00355) slmA 71678..72274 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  DPQ29_RS00360 (DPQ29_00360) dut 72381..72839 (-) 459 WP_000976070.1 dUTP diphosphatase -
  DPQ29_RS00365 (DPQ29_00365) coaBC 72817..74037 (-) 1221 WP_000050148.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  DPQ29_RS00370 (DPQ29_00370) radC 74209..74877 (+) 669 WP_001540088.1 DNA repair protein RadC Machinery gene
  DPQ29_RS00375 (DPQ29_00375) rpmB 75094..75330 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  DPQ29_RS00380 (DPQ29_00380) rpmG 75351..75518 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  DPQ29_RS00385 (DPQ29_00385) mutM 75616..76425 (+) 810 WP_001114542.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  DPQ29_RS00390 (DPQ29_00390) coaD 76464..76943 (-) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  DPQ29_RS00395 (DPQ29_00395) waaA 76951..78228 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  DPQ29_RS00400 (DPQ29_00400) rfaQ 78641..79699 (+) 1059 WP_000360417.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25274.35 Da        Isoelectric Point: 7.9748

>NTDB_id=258717 DPQ29_RS00370 WP_001540088.1 74209..74877(+) (radC) [Escherichia coli strain MCJCHV-1]
MKNNAQLLMPREKMLKFGISSLTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=258717 DPQ29_RS00370 WP_001540088.1 74209..74877(+) (radC) [Escherichia coli strain MCJCHV-1]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCTCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACAGAG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.099

100

0.491