Detailed information NTG0258665

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: CXB48_RS02940
• Genome accession: NZ_CP025149
• Coordinates: 620482..621546 (+)
• Length: 354 a.a.
• NCBI ID: WP_017244291.1
• Uniprot ID: -
• Organism: Stutzerimonas stutzeri strain SGAir0442
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 615482..626546

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CXB48_RS02925 (CXB48_02920)	-	615608..616402 (+)	795	WP_084902458.1	thermonuclease family protein	-
CXB48_RS02930 (CXB48_02925)	-	616544..617812 (+)	1269	WP_011911783.1	malic enzyme-like NAD(P)-binding protein	-
CXB48_RS02935 (CXB48_02930)	-	617879..620302 (-)	2424	WP_049340781.1	penicillin-binding protein 1A	-
CXB48_RS02940 (CXB48_02935)	comM	620482..621546 (+)	1065	WP_017244291.1	pilus assembly protein PilM	Machinery gene
CXB48_RS02945 (CXB48_02940)	pilN	621546..622118 (+)	573	WP_014595705.1	type 4a pilus biogenesis protein PilN	-
CXB48_RS02950 (CXB48_02945)	pilO	622115..622741 (+)	627	WP_095460896.1	type 4a pilus biogenesis protein PilO	-
CXB48_RS02955 (CXB48_02950)	pilP	622738..623265 (+)	528	WP_095460897.1	type 4a pilus biogenesis lipoprotein PilP	-
CXB48_RS02960 (CXB48_02955)	pilQ	623319..625418 (+)	2100	WP_041755270.1	type IV pilus secretin PilQ	Machinery gene
CXB48_RS02965 (CXB48_02960)	aroK	625425..625970 (+)	546	WP_041755271.1	shikimate kinase AroK	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 37750.24 Da
• Isoelectric Point: 4.6880

>NTDB_id=258665 CXB48_RS02940 WP_017244291.1 620482..621546(+) (comM) [Stutzerimonas stutzeri strain SGAir0442]
MLGLFTKKANTLLGIDISSTSVKLLELSRSGNRYRVEAYAVEPLPPNAVVEKNIAELEGVGQALQRVVAKAKTGCKSAVV
AVSGSAVITKMIEMDAGLSDEELENQLKIEADQYIPYPLEEVAIDFEVQGPAPRAPGRVEVLLAACRKENVEIREAALAL
AGLTAKVVDVEAYALERSYGLLASQLGTGHGELTVAVVDIGATMTTLSVLHNGRTIYTREQLFGGRQLTEEIQRRYGLSQ
EEAGLAKKQGGLPDDYDSEVLLPFKEAVVQQVSRSLQFFFAAGQFHDVDCILLAGGTASISGLDHMIQQKIGTQTLVANP
FADMALSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide

• Length: 1065 bp

>NTDB_id=258665 CXB48_RS02940 WP_017244291.1 620482..621546(+) (comM) [Stutzerimonas stutzeri strain SGAir0442]
GTGCTAGGGCTCTTCACTAAGAAAGCGAACACGCTGCTTGGGATCGATATCAGTTCGACCTCAGTCAAGCTCCTCGAATT
AAGTCGATCGGGTAATCGGTACCGCGTCGAGGCTTATGCCGTCGAGCCGCTACCACCGAATGCCGTCGTCGAAAAGAACA
TCGCCGAACTTGAGGGTGTCGGTCAGGCCCTGCAGCGAGTCGTTGCCAAGGCCAAGACCGGCTGCAAGTCCGCTGTTGTC
GCTGTCTCCGGGTCTGCCGTCATCACGAAGATGATCGAGATGGATGCCGGGCTTTCTGATGAAGAGCTCGAGAATCAGCT
CAAGATCGAGGCGGATCAGTACATCCCCTACCCACTGGAGGAAGTCGCGATCGACTTCGAGGTGCAAGGTCCTGCGCCTC
GCGCGCCTGGCAGGGTAGAAGTTCTCCTCGCCGCTTGCCGTAAAGAGAATGTCGAGATCCGTGAAGCCGCGCTGGCCTTG
GCCGGGCTTACCGCCAAAGTGGTGGATGTCGAGGCCTATGCGCTTGAGCGCTCCTACGGATTGCTCGCTTCACAGTTGGG
TACAGGGCACGGCGAGCTGACCGTTGCCGTCGTCGACATCGGCGCGACCATGACAACCCTGAGCGTGCTGCATAACGGGC
GTACCATCTACACGCGCGAGCAGCTGTTCGGTGGCCGCCAACTGACCGAAGAGATCCAGCGCCGCTACGGTCTGTCTCAG
GAAGAAGCCGGCCTTGCCAAGAAGCAAGGTGGTCTCCCAGATGACTACGACAGTGAAGTCCTGCTTCCGTTCAAGGAGGC
GGTGGTGCAGCAGGTATCCCGCTCGTTGCAGTTCTTCTTCGCTGCAGGGCAGTTCCACGACGTCGATTGCATCCTGCTCG
CGGGCGGAACGGCCTCCATTTCGGGCCTCGATCACATGATTCAGCAGAAGATCGGAACGCAAACTCTAGTGGCTAATCCT
TTCGCCGATATGGCTTTGAGCAGCAAGGTGAACGCCGGGGCGCTGGCCAGTGATGCGCCTGCGTTAATGATTGCATGCGG
TTTGGCGCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (14-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	55.65	100	0.557
pilM	Acinetobacter baumannii D1279779	55.65	100	0.557
comM	Acinetobacter baylyi ADP1	53.39	100	0.534
pilM	Legionella pneumophila strain ERS1305867	46.045	100	0.46