Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | DPV67_RS10780 | Genome accession | NZ_CP030106 |
| Coordinates | 2213208..2213723 (+) | Length | 171 a.a. |
| NCBI ID | WP_000477151.1 | Uniprot ID | V5VA61 |
| Organism | Acinetobacter baumannii strain DA33382 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2208208..2218723
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DPV67_RS10765 (DPV67_10760) | - | 2208539..2209999 (+) | 1461 | WP_000004974.1 | amino acid permease | - |
| DPV67_RS10770 (DPV67_10765) | - | 2210277..2211482 (+) | 1206 | WP_000512708.1 | RtcB family protein | - |
| DPV67_RS19845 | - | 2211501..2211644 (+) | 144 | WP_162138624.1 | hypothetical protein | - |
| DPV67_RS10775 (DPV67_10770) | omp38 | 2211767..2212828 (-) | 1062 | WP_000777885.1 | outer membrane protein Omp38 | - |
| DPV67_RS10780 (DPV67_10775) | fimT | 2213208..2213723 (+) | 516 | WP_000477151.1 | GspH/FimT family pseudopilin | Machinery gene |
| DPV67_RS10785 (DPV67_10780) | - | 2213832..2215007 (+) | 1176 | WP_000129968.1 | thiolase family protein | - |
| DPV67_RS10790 (DPV67_10785) | - | 2215134..2215577 (+) | 444 | WP_001176585.1 | VOC family protein | - |
| DPV67_RS10795 (DPV67_10790) | - | 2215620..2215973 (-) | 354 | WP_000457783.1 | DMT family transporter | - |
| DPV67_RS10800 (DPV67_10795) | - | 2216056..2216541 (-) | 486 | WP_000935247.1 | DUF934 domain-containing protein | - |
| DPV67_RS10805 (DPV67_10800) | - | 2216534..2218177 (-) | 1644 | WP_000281764.1 | nitrite/sulfite reductase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19606.86 Da Isoelectric Point: 8.8196
>NTDB_id=258665 DPV67_RS10780 WP_000477151.1 2213208..2213723(+) (fimT) [Acinetobacter baumannii strain DA33382]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=258665 DPV67_RS10780 WP_000477151.1 2213208..2213723(+) (fimT) [Acinetobacter baumannii strain DA33382]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAACATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAT
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAACATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAT
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.976 |
97.076 |
0.427 |