Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DPV67_RS03850 Genome accession   NZ_CP030106
Coordinates   792708..793304 (+) Length   198 a.a.
NCBI ID   WP_000490551.1    Uniprot ID   A0AA36KBA4
Organism   Acinetobacter baumannii strain DA33382     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 787708..798304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPV67_RS03820 (DPV67_03820) - 787888..788262 (+) 375 WP_000800035.1 TonB C-terminal domain-containing protein -
  DPV67_RS03825 (DPV67_03825) - 788435..789202 (+) 768 WP_000934174.1 class I SAM-dependent methyltransferase -
  DPV67_RS03830 (DPV67_03830) - 789283..790368 (-) 1086 WP_000825833.1 alpha/beta fold hydrolase -
  DPV67_RS03835 (DPV67_03835) - 790502..791689 (+) 1188 WP_001076388.1 O-succinylhomoserine sulfhydrylase -
  DPV67_RS03840 (DPV67_03840) - 791867..792103 (+) 237 WP_000917295.1 hypothetical protein -
  DPV67_RS03845 (DPV67_03845) - 792369..792698 (+) 330 WP_001024697.1 YbaB/EbfC family nucleoid-associated protein -
  DPV67_RS03850 (DPV67_03850) recR 792708..793304 (+) 597 WP_000490551.1 recombination mediator RecR Machinery gene
  DPV67_RS03855 (DPV67_03855) - 793610..794734 (+) 1125 WP_000486131.1 ribonuclease D -
  DPV67_RS03860 (DPV67_03860) - 795237..795503 (+) 267 WP_000183702.1 hypothetical protein -
  DPV67_RS03865 (DPV67_03865) - 795634..795975 (+) 342 WP_072292248.1 hypothetical protein -
  DPV67_RS03870 (DPV67_03870) - 796046..796210 (-) 165 WP_000086293.1 hypothetical protein -
  DPV67_RS03875 (DPV67_03875) - 796698..796958 (+) 261 WP_188146221.1 YcgL domain-containing protein -
  DPV67_RS03880 (DPV67_03880) - 796951..797337 (+) 387 WP_001206390.1 hypothetical protein -
  DPV67_RS03885 (DPV67_03885) - 797367..798218 (+) 852 WP_001271636.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21801.90 Da        Isoelectric Point: 6.1660

>NTDB_id=258648 DPV67_RS03850 WP_000490551.1 792708..793304(+) (recR) [Acinetobacter baumannii strain DA33382]
MFSDRFEQLVQALRILPSVGPKSAQRMALHLLMKNREGAFALAHALHEASSYIHECSVCHSLTEHEICDICASTERDDQL
LCVVESPADVMAIEQSGSFRGKYHVLGGHLSPLDGIGPEEIGIPYLIQRLSQGTIEEVILATNATVEGQATAHYLVEATK
HLPIHMTRIAQGVPQGGELEYVDSHTLSQAVHNRMRMK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=258648 DPV67_RS03850 WP_000490551.1 792708..793304(+) (recR) [Acinetobacter baumannii strain DA33382]
GTGTTTAGTGATAGATTTGAACAACTCGTTCAAGCTTTACGTATTTTGCCTAGCGTTGGACCGAAGTCGGCCCAACGTAT
GGCTTTACATCTTTTGATGAAAAATCGTGAAGGTGCATTTGCTTTAGCACATGCTCTACATGAAGCATCAAGTTATATTC
ATGAATGTAGTGTTTGCCACTCTTTAACAGAGCATGAAATTTGTGATATTTGCGCTTCAACAGAAAGAGATGATCAATTG
CTTTGTGTAGTTGAGTCTCCGGCAGATGTTATGGCAATCGAGCAAAGTGGTAGTTTTCGTGGCAAATACCATGTGTTGGG
TGGACACCTTTCTCCATTAGATGGAATCGGGCCAGAAGAAATAGGCATTCCTTATCTAATCCAACGTTTAAGCCAAGGTA
CGATCGAAGAAGTCATTTTGGCAACTAATGCTACTGTGGAAGGTCAGGCGACAGCGCATTATTTGGTTGAAGCGACGAAG
CATTTACCTATTCACATGACACGTATTGCTCAAGGCGTACCACAAGGTGGCGAGCTTGAATATGTGGATAGTCATACCTT
AAGTCAGGCTGTTCATAACCGTATGCGTATGAAATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36KBA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.538

93.939

0.475
  recR Bacillus subtilis subsp. subtilis str. 168

43.523

97.475

0.424