Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   DOU34_RS18825 Genome accession   NZ_CP030097
Coordinates   3776688..3776918 (+) Length   76 a.a.
NCBI ID   WP_004264650.1    Uniprot ID   A7Z0H7
Organism   Bacillus amyloliquefaciens strain SH-B74     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3771688..3781918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOU34_RS18795 ridA 3771876..3772256 (+) 381 WP_004264663.1 2-iminobutanoate/2-iminopropanoate deaminase -
  DOU34_RS18800 spoVG 3772452..3772745 (+) 294 WP_004264660.1 septation regulator SpoVG -
  DOU34_RS18805 glmU 3772937..3774307 (+) 1371 WP_004264658.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  DOU34_RS18810 - 3774329..3775282 (+) 954 WP_007409928.1 ribose-phosphate diphosphokinase -
  DOU34_RS18815 - 3775367..3775975 (+) 609 WP_011996173.1 50S ribosomal protein L25/general stress protein Ctc -
  DOU34_RS18820 pth 3776060..3776626 (+) 567 WP_007409930.1 aminoacyl-tRNA hydrolase -
  DOU34_RS18825 subA/fin 3776688..3776918 (+) 231 WP_004264650.1 anti-sigma-F factor Fin family protein Machinery gene
  DOU34_RS18830 mfd 3776988..3780521 (+) 3534 WP_061047139.1 transcription-repair coupling factor -
  DOU34_RS18835 spoVT 3780658..3781194 (+) 537 WP_004264646.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8899.87 Da        Isoelectric Point: 5.8002

>NTDB_id=258628 DOU34_RS18825 WP_004264650.1 3776688..3776918(+) (subA/fin) [Bacillus amyloliquefaciens strain SH-B74]
MALHYFCRHCGFKVGSLEYSTVPTQSLGFQHLTNEERNDMISYKDNGDVHVLTICEDCQEALERNPHYHEHNTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=258628 DOU34_RS18825 WP_004264650.1 3776688..3776918(+) (subA/fin) [Bacillus amyloliquefaciens strain SH-B74]
ATGGCTTTGCATTATTTCTGCCGCCACTGCGGCTTTAAGGTAGGGAGCCTGGAATATTCGACGGTGCCGACACAGTCGCT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCATATAAAGACAATGGAGATGTCCATGTTCTTACAA
TTTGTGAAGACTGCCAAGAGGCGCTGGAGCGCAATCCGCACTACCATGAACACAACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

86.842

100

0.868

Multiple sequence alignment