Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   DOU34_RS13045 Genome accession   NZ_CP030097
Coordinates   2674752..2675447 (-) Length   231 a.a.
NCBI ID   WP_014305616.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SH-B74     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2669752..2680447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOU34_RS13025 - 2670133..2670852 (-) 720 WP_015240419.1 TIGR02206 family membrane protein -
  DOU34_RS13030 - 2670960..2672900 (-) 1941 WP_007408811.1 ABC transporter permease -
  DOU34_RS13035 - 2672897..2673652 (-) 756 WP_007408812.1 ABC transporter ATP-binding protein -
  DOU34_RS13040 - 2673755..2674759 (-) 1005 WP_032868346.1 sensor histidine kinase -
  DOU34_RS13045 braR 2674752..2675447 (-) 696 WP_014305616.1 response regulator transcription factor Regulator
  DOU34_RS13050 - 2675511..2676821 (-) 1311 WP_015240422.1 FtsX-like permease family protein -
  DOU34_RS13055 - 2676811..2677506 (-) 696 WP_007408816.1 ABC transporter ATP-binding protein -
  DOU34_RS13060 - 2677522..2678502 (-) 981 WP_039063489.1 ABC transporter permease ytrC -
  DOU34_RS13065 - 2678539..2679525 (-) 987 WP_039063491.1 ABC transporter permease -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26853.11 Da        Isoelectric Point: 7.1196

>NTDB_id=258591 DOU34_RS13045 WP_014305616.1 2674752..2675447(-) (braR) [Bacillus amyloliquefaciens strain SH-B74]
MFHILLIEDDNTLFHEMKERLTGWSFAVHGIKDFSRVIREFTEIKPDLVIIDVQLPKFDGFHWCRMIRSQSNVPILFLSS
RDHPADMVMSMQLGADDFIQKPFHFDVLIAKIQAVFRRVHQYGTEPALMKRWCGAVIDTETNTVSRKNGSVELTKNEMLI
LKLLAEQKNKIVSREELIRSLWNDERFVSDNTLTVNVNRLRKKLDQLGIGKMIETKVGQGYIAKEEDGLYD

Nucleotide


Download         Length: 696 bp        

>NTDB_id=258591 DOU34_RS13045 WP_014305616.1 2674752..2675447(-) (braR) [Bacillus amyloliquefaciens strain SH-B74]
ATGTTTCACATTTTGTTAATAGAAGATGATAACACTTTGTTTCATGAGATGAAAGAGAGATTAACGGGCTGGTCATTTGC
GGTGCACGGAATAAAAGATTTCAGCCGGGTCATCCGGGAGTTTACCGAAATCAAGCCTGATTTGGTGATCATTGATGTAC
AGCTGCCGAAATTTGACGGCTTTCATTGGTGCAGAATGATACGTTCCCAATCAAACGTGCCGATACTCTTTTTGTCCTCG
CGCGATCATCCCGCGGATATGGTCATGTCGATGCAGCTCGGGGCAGATGATTTTATTCAGAAGCCTTTTCACTTTGATGT
GTTAATCGCGAAAATACAGGCGGTGTTCCGCCGTGTGCATCAATACGGCACAGAACCGGCGCTGATGAAAAGATGGTGCG
GGGCGGTCATTGACACAGAAACCAACACGGTCAGCCGTAAAAACGGTTCGGTCGAGCTGACCAAAAACGAAATGCTGATC
TTAAAACTGCTGGCTGAGCAGAAAAATAAAATCGTCAGCCGGGAAGAACTCATCAGAAGCCTATGGAATGATGAGCGTTT
CGTCAGTGATAATACGCTGACGGTGAATGTCAACCGGCTGCGGAAAAAACTCGATCAATTAGGCATCGGGAAAATGATTG
AAACCAAGGTGGGGCAGGGATACATCGCAAAGGAAGAAGACGGTCTTTATGATTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-222)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.639

94.805

0.385