Detailed information NTG0258576

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: DOU34_RS11645
• Genome accession: NZ_CP030097
• Coordinates: 2389472..2391850 (-)
• Length: 792 a.a.
• NCBI ID: WP_042635385.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain SH-B74
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2384472..2396850

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DOU34_RS11610	-	2385544..2386272 (+)	729	WP_007408209.1	amino acid ABC transporter ATP-binding protein	-
DOU34_RS11615	-	2386293..2387120 (+)	828	WP_061046590.1	transporter substrate-binding domain-containing protein	-
DOU34_RS11620	-	2387177..2387827 (+)	651	WP_007408207.1	amino acid ABC transporter permease	-
DOU34_RS11625	-	2387846..2388502 (+)	657	WP_015417903.1	amino acid ABC transporter permease	-
DOU34_RS11630	-	2388538..2388669 (-)	132	WP_003152741.1	YrzQ family protein	-
DOU34_RS11635	-	2388691..2388882 (-)	192	WP_003152738.1	hypothetical protein	-
DOU34_RS11640	-	2388895..2389353 (-)	459	WP_007408205.1	PRC-barrel domain-containing protein	-
DOU34_RS11645	recD/recD2/recDB	2389472..2391850 (-)	2379	WP_042635385.1	ATP-dependent RecD-like DNA helicase	Machinery gene
DOU34_RS11650	-	2391869..2392489 (-)	621	WP_088461189.1	tetratricopeptide repeat protein	-
DOU34_RS11655	mnmA	2392578..2393693 (-)	1116	WP_012118077.1	tRNA 2-thiouridine(34) synthase MnmA	-
DOU34_RS11660	-	2393730..2394869 (-)	1140	WP_012118078.1	cysteine desulfurase family protein	-
DOU34_RS11665	cymR	2394888..2395304 (-)	417	WP_003152730.1	cysteine metabolism transcriptional regulator CymR	-
DOU34_RS11670	rarA	2395499..2396767 (+)	1269	WP_003152729.1	replication-associated recombination protein A	Machinery gene

Sequence

Protein

• Length: 792 a.a.
• Molecular weight: 88321.01 Da
• Isoelectric Point: 4.9121

>NTDB_id=258576 DOU34_RS11645 WP_042635385.1 2389472..2391850(-) (recD/recD2/recDB) [Bacillus amyloliquefaciens strain SH-B74]
MDQLNIEEQPYVKGVIHTVIYHNDTNLYTVLKVKVAETSEAIEDKVVSVTGYFPLLQEDETYTFYGKTATHPKFGLQFQA
EHFKKEIPTTKEGIIHYLSSDLFEGIGKKTAEEIVKKLGDGALNKILTDASVLYDVPKMSKKKADKLAGELQRHQGLEQI
MISLNQYGFGPQLSMKIYQAYETETLEKIQENPYQLVKDVEGIGFVKADELGGKMGLSGNHPERIKAAILYTIESTCLSE
GHTYIETKQLIINTQTLLNQSAEGGLVTEMDAADGIIALGESKDIVIEGERCYFPSLFYAEQNVAKRVLDIAAQTEYADQ
FPESEFLLALGELEERMNVQYAPSQKDAIQKALSSPMLLLTGGPGTGKTTVIKGIVELYSELHGVSLDPGDYKKDEAFPV
LLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTYNEDQPIEGKLIIIDEASMLDIWLASHLFKALPKHIQLIVVGD
EDQLPSVGPGQVLRDLLASEVLPTVRLTDIYRQAEGSSIVELAHDMKKGLLPKGLTAPTKDRSFIRCNSSQIKEVVDQVV
SNALKKGYTSRDIQVLAPMYRGKAGINELNMLLQDIMNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGDIGEIV
SIFYAKENTEKEDMVVVSFDGNEITFTKKDFSQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAITRAKKF
LILCGEEEALEWGVKNNDATVRQTSLKNRLTEQTEEMDAELAALQKELPFSVYDANIGMEGITPFDFMEEKA

Nucleotide

• Length: 2379 bp

>NTDB_id=258576 DOU34_RS11645 WP_042635385.1 2389472..2391850(-) (recD/recD2/recDB) [Bacillus amyloliquefaciens strain SH-B74]
GTGGATCAGCTGAACATCGAAGAACAGCCGTATGTAAAAGGCGTCATTCATACGGTCATTTATCATAATGACACCAACCT
GTATACAGTGCTGAAAGTCAAGGTTGCAGAAACGTCTGAGGCGATCGAAGACAAGGTCGTATCCGTAACGGGCTACTTCC
CTCTGCTGCAAGAAGATGAGACCTACACATTTTACGGAAAAACCGCCACGCATCCTAAGTTCGGCCTGCAATTTCAGGCT
GAGCACTTTAAAAAAGAAATTCCGACCACAAAAGAAGGGATCATTCACTATTTATCAAGTGATCTGTTTGAAGGAATCGG
AAAAAAAACGGCGGAAGAAATCGTCAAAAAGCTCGGAGACGGCGCGCTCAATAAAATTCTGACGGATGCGTCGGTGCTTT
ACGATGTGCCGAAAATGTCGAAAAAGAAAGCGGATAAGCTTGCCGGAGAGCTGCAGCGGCATCAGGGGCTTGAGCAGATT
ATGATCTCTCTGAACCAATACGGTTTCGGGCCCCAGCTATCCATGAAAATATATCAGGCCTACGAAACGGAAACACTGGA
GAAAATTCAGGAAAATCCTTATCAGCTTGTAAAAGACGTTGAAGGCATCGGCTTTGTGAAAGCTGACGAGCTGGGCGGAA
AAATGGGTCTGTCAGGAAACCACCCGGAGCGGATCAAAGCGGCTATCTTATATACAATTGAATCGACCTGTCTTTCAGAG
GGCCATACGTACATAGAAACAAAGCAGCTGATAATCAATACGCAAACGCTCCTGAATCAGTCAGCTGAAGGCGGCCTCGT
CACGGAAATGGATGCGGCTGACGGCATCATCGCCCTCGGAGAGAGTAAGGATATCGTCATAGAAGGAGAACGCTGCTATT
TTCCGTCCTTGTTTTACGCCGAACAAAATGTCGCAAAACGCGTGCTCGACATTGCGGCTCAGACGGAGTATGCCGATCAA
TTTCCTGAATCGGAATTTCTGCTTGCACTCGGTGAACTGGAAGAACGGATGAATGTTCAATACGCACCAAGCCAAAAGGA
TGCCATTCAAAAAGCGCTGTCTTCACCGATGCTTTTACTGACCGGAGGACCCGGGACGGGGAAAACGACCGTTATTAAAG
GAATCGTGGAATTATACAGTGAACTGCACGGAGTATCGCTTGACCCCGGTGATTATAAAAAAGACGAGGCGTTCCCGGTG
CTGCTTGCCGCGCCGACGGGAAGAGCCGCAAAACGGATGAGCGAATCTACGGGTCTGCCGGCTGTTACGATACACAGGCT
GCTCGGCTGGAATGGCGCTGAAGGCTTTACCTACAATGAAGATCAGCCGATAGAAGGGAAACTGATCATTATAGACGAAG
CGAGTATGCTCGATATCTGGCTCGCCAGCCATTTGTTTAAGGCGCTTCCTAAGCACATTCAGCTCATTGTCGTCGGTGAT
GAAGACCAGCTTCCTTCAGTAGGACCGGGGCAGGTGCTCAGAGACCTTTTGGCTTCTGAGGTGCTGCCGACCGTGCGCCT
GACAGATATTTACCGTCAGGCTGAAGGATCATCCATTGTGGAACTTGCGCATGATATGAAAAAAGGACTGCTTCCAAAGG
GGCTGACCGCGCCGACAAAGGACCGCTCATTTATCCGCTGTAATTCTTCACAGATTAAAGAAGTCGTGGATCAGGTCGTC
TCGAACGCGTTAAAAAAGGGGTATACCTCCAGGGATATTCAAGTGCTTGCCCCGATGTACAGGGGAAAAGCGGGAATTAA
CGAGCTGAATATGCTTCTTCAAGACATCATGAATCCGCCGAAAGAAAAAAGGCGGGAGCTGAAATTCGGAGATGTCGTCT
ACAGGACGGGCGATAAAATATTGCAGCTTGTCAACCAGCCGGAAAACAATGTGTTTAACGGCGATATCGGCGAAATCGTA
TCCATTTTTTATGCCAAAGAAAATACGGAAAAAGAAGACATGGTCGTCGTCTCATTTGACGGCAACGAAATCACCTTTAC
GAAAAAGGATTTCAGCCAGTTTACCCACGCGTACTGCTGTTCGATTCATAAGTCGCAGGGAAGCGAATTCCCGATTGTCG
TCCTGCCTGTCGTCAAAGGCTACTATCGAATGCTCAGGAGAAATCTGCTTTATACCGCCATTACAAGGGCGAAAAAATTT
CTGATTCTTTGCGGAGAAGAAGAAGCGCTTGAATGGGGCGTCAAAAACAATGATGCCACCGTCAGACAGACATCGCTTAA
AAACAGGCTCACAGAGCAGACTGAAGAGATGGATGCAGAACTGGCCGCCCTGCAAAAAGAGCTGCCGTTCAGTGTATATG
ATGCGAACATCGGAATGGAAGGCATCACGCCGTTTGACTTTATGGAAGAAAAAGCGTAA

Domains

Predicted by InterProScan.

• AAA domain (AAA_30) (341-548)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (589-659)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (676-724)

• Helix-hairpin-helix containing domain (HHH_RecD2) (154-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	88.748	99.874	0.886