Detailed information NTG0258577

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: DOU34_RS11670
• Genome accession: NZ_CP030097
• Coordinates: 2395499..2396767 (+)
• Length: 422 a.a.
• NCBI ID: WP_003152729.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain SH-B74
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2390499..2401767

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DOU34_RS11650	-	2391869..2392489 (-)	621	WP_088461189.1	tetratricopeptide repeat protein	-
DOU34_RS11655	mnmA	2392578..2393693 (-)	1116	WP_012118077.1	tRNA 2-thiouridine(34) synthase MnmA	-
DOU34_RS11660	-	2393730..2394869 (-)	1140	WP_012118078.1	cysteine desulfurase family protein	-
DOU34_RS11665	cymR	2394888..2395304 (-)	417	WP_003152730.1	cysteine metabolism transcriptional regulator CymR	-
DOU34_RS11670	rarA	2395499..2396767 (+)	1269	WP_003152729.1	replication-associated recombination protein A	Machinery gene
DOU34_RS11675	-	2396883..2397647 (-)	765	WP_061046589.1	tRNA threonylcarbamoyladenosine dehydratase	-
DOU34_RS11685	aspS	2397974..2399752 (-)	1779	WP_020956140.1	aspartate--tRNA ligase	-
DOU34_RS11690	hisS	2399767..2401041 (-)	1275	WP_053103956.1	histidine--tRNA ligase	-
DOU34_RS20795	-	2401398..2401568 (-)	171	WP_087920774.1	YrzK family protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46660.57 Da
• Isoelectric Point: 8.5446

>NTDB_id=258577 DOU34_RS11670 WP_003152729.1 2395499..2396767(+) (rarA) [Bacillus amyloliquefaciens strain SH-B74]
MKPLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDME
IVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALKR
ALTDEHRGLGSYSVSVDDDAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTIRITRETAEECLQKKSYTHDKNGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESISRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAISAVDEALKDIRTGKIGDVPKHLKDAHYKGAQELGRGIGYQYPHDFENGWVEQQYLPDPLKNKQYYKP
KQTGKFEAAIKQVYEKLMKQKK

Nucleotide

• Length: 1269 bp

>NTDB_id=258577 DOU34_RS11670 WP_003152729.1 2395499..2396767(+) (rarA) [Bacillus amyloliquefaciens strain SH-B74]
ATGAAACCATTGGCGTATCGGATGCGGCCTGCCAATATCGAAGACATTATCGGCCAGGAACATTTGGTCAAAGAAGATAA
AATCATCGGCAGAATGGTGCGTGCAAAGCACTTATCATCCATGATCCTGTACGGACCGCCGGGCATCGGAAAAACGTCCA
TCGCCACAGCGATCGCAGGATCGACAAGCATCGCATTCAGGAAATTGAATGCCGTCATTCATAATAAAAAAGACATGGAG
ATTGTCGTACAGGAAGCGAAAATGTCAGGCCAGGTCATTTTAATCCTTGATGAAGTGCACAGGCTTGATAAGGGAAAGCA
GGATTTTCTGCTGCCCTATTTAGAAAACGGCATGATTATTTTAATCGGCGCGACGACCGCCAATCCTTATCATGCCATTA
ATCCCGCCATCAGAAGCCGGACCCAGATATTTGAGCTTGAACCGTTAACACCCGATCTGATCAAGCAGGCATTGAAAAGA
GCGCTCACAGATGAACACCGGGGACTCGGCTCCTACAGCGTTTCGGTGGACGACGACGCGATGGATCATTTCGCGCAAGG
GTGCGGAGGAGACGTCCGTTCCGCTTTGAACGCACTGGAGCTTGCCGTGCTCTCCACAAAGGAATCAAGCGACGGCACGA
TCCGGATTACACGGGAAACAGCGGAAGAATGTCTGCAGAAAAAAAGCTATACTCATGATAAAAACGGCGATGCGCATTAT
GACGTCTTATCCGCCTTCCAAAAATCGATCCGAGGCTCGGACGCAAACGCCGCCCTTCATTATCTGGCCCGTCTGATCGA
AGCCGGCGACCTTGAAAGCATATCAAGAAGGCTTCTCGTGATCGCCTATGAAGATATCGGCCTCGCAAGCCCGCAGGCAG
GCCCCCGGGTGCTGAGCGCGATTCAGACCGCAGAACGGATCGGCTTTCCGGAAGCGAGAATTCCGCTGGCCAATGCGGTA
ATCGAATTATGCCTCTCGCCAAAATCAAACTCCGCCATCTCAGCCGTTGATGAGGCGCTCAAAGACATCAGGACGGGTAA
AATCGGCGATGTGCCGAAACATTTAAAAGACGCCCACTATAAAGGGGCCCAAGAGCTCGGACGCGGGATCGGATATCAAT
ATCCTCATGATTTCGAGAACGGATGGGTCGAACAGCAATATTTACCTGATCCGTTAAAAAACAAGCAATACTATAAACCG
AAACAAACGGGAAAATTTGAAGCCGCCATAAAGCAAGTGTATGAAAAACTGATGAAGCAGAAAAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	90.974	99.763	0.908