Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   CW750_RS03020 Genome accession   NZ_CP025136
Coordinates   604617..605177 (-) Length   186 a.a.
NCBI ID   WP_016265666.1    Uniprot ID   A0A9N7J0X6
Organism   Latilactobacillus sakei strain WiKim0072     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 599617..610177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CW750_RS02990 (CW750_02990) rplA 600904..601593 (-) 690 WP_016265663.1 50S ribosomal protein L1 -
  CW750_RS02995 (CW750_02995) rplK 601692..602117 (-) 426 WP_004270859.1 50S ribosomal protein L11 -
  CW750_RS03000 (CW750_03000) - 602243..603106 (-) 864 WP_226474434.1 alpha/beta fold hydrolase -
  CW750_RS03005 (CW750_03005) nusG 603507..604055 (-) 549 WP_011375364.1 transcription termination/antitermination protein NusG -
  CW750_RS03010 (CW750_03010) secE 604153..604326 (-) 174 WP_016265665.1 preprotein translocase subunit SecE -
  CW750_RS03015 (CW750_03015) rpmG 604342..604491 (-) 150 WP_011375366.1 50S ribosomal protein L33 -
  CW750_RS03020 (CW750_03020) sigH 604617..605177 (-) 561 WP_016265666.1 sigma-70 family RNA polymerase sigma factor Regulator
  CW750_RS03025 (CW750_03025) - 605255..605788 (-) 534 WP_016265667.1 NYN domain-containing protein -
  CW750_RS03030 (CW750_03030) rlmB 605792..606679 (-) 888 WP_011375369.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CW750_RS03035 (CW750_03035) - 606666..607073 (-) 408 WP_004265086.1 Mini-ribonuclease 3 -
  CW750_RS03040 (CW750_03040) cysS 607070..608476 (-) 1407 WP_016265668.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 22072.18 Da        Isoelectric Point: 6.6722

>NTDB_id=258565 CW750_RS03020 WP_016265666.1 604617..605177(-) (sigH) [Latilactobacillus sakei strain WiKim0072]
MEQTKRDELLIAAVAQNDSQALDVLFKAYLPMVYHTVAPYYIRLFDEDDWLQEARIVCYETCQCYDCQKGKSFGSFYKLR
FKNHILNLLRRELAQKRRGDRQAVLIAERPEHDAISEDTMTYYQSQFELRCYLETLSPFELVSFRVLTGQLSIDEACCQL
DCTIDQLKRGQSRCQTKLKRYYQENR

Nucleotide


Download         Length: 561 bp        

>NTDB_id=258565 CW750_RS03020 WP_016265666.1 604617..605177(-) (sigH) [Latilactobacillus sakei strain WiKim0072]
ATGGAACAAACAAAGCGCGACGAACTGCTGATTGCAGCAGTGGCTCAGAATGATTCACAAGCACTAGATGTATTATTCAA
GGCGTATTTGCCGATGGTGTATCACACCGTGGCGCCATATTATATCCGGTTATTCGATGAAGACGATTGGTTACAAGAAG
CCCGGATTGTTTGTTACGAAACTTGCCAATGTTACGATTGTCAAAAAGGCAAAAGTTTTGGGAGTTTCTATAAATTACGG
TTTAAAAACCACATTTTAAATTTACTACGACGAGAACTCGCACAAAAACGGCGAGGTGATCGTCAGGCAGTATTGATTGC
GGAGCGGCCGGAACACGACGCGATTTCAGAAGATACGATGACTTACTATCAATCGCAGTTTGAATTGAGATGTTATCTTG
AAACGCTGTCGCCTTTTGAATTAGTGTCGTTTCGGGTGCTGACCGGGCAGCTTTCAATTGATGAAGCTTGTTGCCAACTC
GATTGTACGATTGACCAGTTGAAACGAGGCCAATCAAGGTGCCAGACTAAGTTAAAACGGTATTATCAAGAGAATCGTTA
A

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(25-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

97.849

100

0.978

Multiple sequence alignment