Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   CW750_RS01070 Genome accession   NZ_CP025136
Coordinates   214965..215369 (-) Length   134 a.a.
NCBI ID   WP_235596237.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0072     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 209965..220369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CW750_RS01030 (CW750_01030) - 210112..210477 (+) 366 WP_011374991.1 DUF805 domain-containing protein -
  CW750_RS01040 (CW750_01040) - 211020..211478 (-) 459 WP_035145008.1 hypothetical protein -
  CW750_RS01045 (CW750_01045) - 211533..212729 (-) 1197 WP_011374993.1 acetate kinase -
  CW750_RS01050 (CW750_01050) - 212751..213761 (-) 1011 WP_016265372.1 class I SAM-dependent methyltransferase -
  CW750_RS01055 (CW750_01055) - 213885..214223 (-) 339 WP_035145011.1 hypothetical protein -
  CW750_RS01060 (CW750_01060) comGF 214186..214698 (-) 513 WP_035145013.1 competence type IV pilus minor pilin ComGF Machinery gene
  CW750_RS01065 (CW750_01065) comGE 214673..214978 (-) 306 WP_016265375.1 hypothetical protein Machinery gene
  CW750_RS01070 (CW750_01070) comGD 214965..215369 (-) 405 WP_235596237.1 hypothetical protein Machinery gene
  CW750_RS01075 (CW750_01075) comGC 215389..215688 (-) 300 WP_025016383.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CW750_RS01080 (CW750_01080) comGB 215685..216692 (-) 1008 WP_061827023.1 type II secretion system F family protein Machinery gene
  CW750_RS01085 (CW750_01085) comGA 216685..217575 (-) 891 WP_025016380.1 competence type IV pilus ATPase ComGA Machinery gene
  CW750_RS01090 (CW750_01090) - 217692..218423 (-) 732 WP_011375002.1 YebC/PmpR family DNA-binding transcriptional regulator -
  CW750_RS01095 (CW750_01095) - 218514..219014 (-) 501 WP_016265379.1 VanZ family protein -
  CW750_RS01100 (CW750_01100) - 219111..219485 (+) 375 WP_011375004.1 hypothetical protein -
  CW750_RS01110 (CW750_01110) - 219672..220286 (-) 615 WP_016265380.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15685.25 Da        Isoelectric Point: 10.1302

>NTDB_id=258558 CW750_RS01070 WP_235596237.1 214965..215369(-) (comGD) [Latilactobacillus sakei strain WiKim0072]
MCVVLAIVSLLSWLPIYQIKQYRAQQAEQLFLHQFETSWDAARQYVAIEPRAVRVMWDAPTHTITFKGAGESFRNHQLVL
PETLTVSNPAEWHLINITHNKGIKPRTLKLKSTLNNREYQYKVQMMWGVLHVQK

Nucleotide


Download         Length: 405 bp        

>NTDB_id=258558 CW750_RS01070 WP_235596237.1 214965..215369(-) (comGD) [Latilactobacillus sakei strain WiKim0072]
ATGTGCGTGGTCTTAGCAATTGTGAGTCTATTAAGTTGGTTACCGATTTATCAAATTAAGCAATACCGTGCGCAACAGGC
TGAGCAGTTGTTTCTACATCAATTTGAAACGAGTTGGGATGCAGCTCGTCAATATGTGGCAATTGAACCGCGTGCCGTCC
GTGTGATGTGGGATGCACCAACACATACGATCACATTTAAAGGTGCTGGTGAGTCATTTAGAAATCATCAACTCGTATTA
CCAGAAACTTTAACAGTGAGTAACCCAGCCGAATGGCATTTAATTAATATTACTCATAATAAGGGTATTAAACCGCGCAC
CTTAAAGTTAAAATCAACGCTTAATAATCGTGAATATCAGTATAAAGTCCAGATGATGTGGGGGGTATTACATGTTCAGA
AGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Latilactobacillus sakei subsp. sakei 23K

99.254

100

0.993

Multiple sequence alignment