Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   CW734_RS12210 Genome accession   NZ_CP025135
Coordinates   2171188..2172996 (-) Length   602 a.a.
NCBI ID   WP_101190665.1    Uniprot ID   -
Organism   Planococcus sp. MB-3u-03     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2166188..2177996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CW734_RS12180 (CW734_12175) - 2166244..2167119 (-) 876 WP_180956216.1 RluA family pseudouridine synthase -
  CW734_RS12185 (CW734_12180) - 2167124..2167933 (-) 810 WP_101190661.1 NAD kinase -
  CW734_RS12190 (CW734_12185) - 2167930..2168607 (-) 678 WP_058383404.1 GTP pyrophosphokinase family protein -
  CW734_RS12195 (CW734_12190) - 2168880..2169449 (+) 570 WP_101190662.1 CYTH domain-containing protein -
  CW734_RS12200 (CW734_12195) - 2169546..2169944 (+) 399 WP_101190663.1 globin -
  CW734_RS12205 (CW734_12200) - 2169941..2170738 (+) 798 WP_101190664.1 ClpXP adapter SpxH family protein -
  CW734_RS12210 (CW734_12205) pepF 2171188..2172996 (-) 1809 WP_101190665.1 oligoendopeptidase F Regulator
  CW734_RS12215 (CW734_12210) - 2173049..2174029 (-) 981 WP_101190666.1 competence protein CoiA family protein -
  CW734_RS19440 (CW734_12215) mecA 2174259..2174913 (-) 655 Protein_2188 adaptor protein MecA -
  CW734_RS12225 (CW734_12220) spxA 2175211..2175602 (-) 392 Protein_2189 transcriptional regulator SpxA -
  CW734_RS12230 (CW734_12225) - 2176003..2177201 (-) 1199 Protein_2190 putative glycoside hydrolase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68868.04 Da        Isoelectric Point: 4.6096

>NTDB_id=258542 CW734_RS12210 WP_101190665.1 2171188..2172996(-) (pepF) [Planococcus sp. MB-3u-03]
MTEKLMTRDQVPAELTWRLEDVFATDAQWEEEFKAVSALAEKAGQYEGTLSAGADALYEALNYKDELSERLRKLYAYAHM
RYDQDTTNSTYQAMDSRIKSLFAKTAAGLSFMTPEILSLDEAELNRYVDEHDGLKLYRHALEELNTMRPHVLKAEQEALL
AQLSEVVGASSETFGMLNNADLEFPEIENENGEKVQITHGNYIRFMESKDRRVREDAFKAVYATYGKFRNTFASTLSGNV
KRDNVHASIRNYSSAREAALSDDHIPEAVYDQLVETVNNNLHLLQRYVALRKEVLGLDQVHMYDMYTPLVKEVKMEIPYD
KATGMMLEGLNALGEEYVGIVKNGIDNRWVDVKENKGKRSGAYSSGAYGTNPYILMNWQDNVDNLFTLAHEFGHSVHSHY
TRESQPFVYGDYSIFVAEVASTTNEALLNEHLVNTTEDEQERIYLLNHWLDGFRGTVFRQTMFAEFEHTIHQMDQNGEAL
TADRLTEVYYELNKKYFGEDMAVDEEIGLEWARIPHFYYNYYVFQYATGFSAATALSKKILEEGQPAVERYINEFLKAGS
SDYPIEVLKKAGVDMTSSEPVEEACKVFGQKLEELEGLLLKK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=258542 CW734_RS12210 WP_101190665.1 2171188..2172996(-) (pepF) [Planococcus sp. MB-3u-03]
ATGACGGAAAAATTAATGACAAGAGATCAAGTGCCTGCAGAACTGACATGGCGCTTGGAGGATGTTTTTGCTACAGATGC
ACAATGGGAAGAAGAATTCAAAGCCGTCTCGGCGCTGGCTGAGAAAGCAGGACAATACGAAGGTACTTTATCAGCCGGGG
CGGATGCCCTGTACGAGGCGCTAAACTATAAAGATGAATTATCGGAGCGCCTGCGCAAGCTCTACGCATACGCACATATG
CGTTATGACCAGGATACGACAAATTCAACATACCAGGCGATGGACAGCCGCATCAAATCGCTTTTTGCCAAGACGGCAGC
AGGTTTGTCTTTCATGACGCCTGAGATCCTGTCTTTGGATGAAGCAGAGCTCAACCGCTATGTAGACGAACATGACGGCC
TTAAGCTTTATCGACACGCGCTCGAAGAACTTAATACAATGCGTCCGCACGTGCTGAAAGCGGAGCAGGAAGCGCTTCTT
GCGCAATTGTCGGAAGTGGTTGGAGCGTCTTCTGAAACATTCGGCATGCTCAATAATGCCGATTTGGAGTTTCCGGAAAT
CGAAAATGAAAACGGAGAAAAAGTGCAGATTACACATGGCAATTACATCCGTTTCATGGAAAGCAAAGATCGCCGCGTGC
GCGAAGACGCATTTAAAGCCGTTTATGCGACGTATGGCAAATTCCGCAATACCTTTGCTTCCACTTTATCCGGAAATGTT
AAACGCGATAATGTCCATGCGAGCATCCGTAATTATTCATCGGCCCGCGAAGCGGCTCTTTCAGATGACCATATTCCGGA
AGCTGTATATGATCAATTGGTCGAAACCGTCAACAACAACCTTCATCTATTGCAGCGCTACGTAGCGCTCCGCAAGGAAG
TATTGGGACTTGACCAAGTCCATATGTATGACATGTATACGCCGCTTGTTAAGGAAGTCAAGATGGAGATCCCTTATGAC
AAGGCGACAGGCATGATGCTCGAAGGCTTGAATGCGCTCGGTGAAGAATATGTCGGGATCGTCAAAAACGGCATCGACAA
CCGCTGGGTTGACGTGAAAGAAAACAAAGGTAAACGAAGCGGCGCTTATTCTTCCGGCGCTTATGGCACAAATCCTTATA
TACTGATGAACTGGCAGGACAATGTAGACAACCTGTTCACTTTGGCACATGAATTCGGCCATAGTGTACACAGCCACTAC
ACAAGAGAAAGCCAGCCGTTTGTCTATGGCGATTATTCCATCTTTGTGGCGGAAGTCGCATCGACGACGAATGAAGCCTT
GTTGAATGAACACTTGGTCAATACGACAGAAGATGAGCAAGAGCGCATTTACTTGCTCAACCACTGGCTGGATGGTTTCC
GCGGCACAGTTTTCCGCCAGACGATGTTTGCTGAATTCGAGCACACAATCCACCAGATGGACCAGAATGGTGAAGCTTTG
ACGGCTGACCGGTTGACGGAAGTGTATTACGAGCTGAACAAAAAGTATTTTGGTGAAGACATGGCAGTGGATGAAGAGAT
CGGCCTCGAGTGGGCACGCATTCCGCATTTCTACTATAATTATTATGTATTCCAGTATGCGACAGGATTCAGCGCAGCTA
CTGCATTAAGCAAAAAGATCCTTGAAGAAGGGCAGCCAGCTGTAGAGCGTTATATTAACGAATTCCTGAAAGCGGGCAGC
TCCGATTACCCGATTGAAGTATTGAAAAAAGCCGGTGTGGACATGACCTCATCCGAGCCGGTCGAAGAGGCGTGCAAAGT
CTTCGGCCAAAAGCTTGAAGAACTCGAAGGATTGCTATTGAAGAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(115-184)

Peptidase family M3 (Peptidase_M3)

(205-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.822

98.671

0.482

Multiple sequence alignment