Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   DOU34_RS06500 Genome accession   NZ_CP030097
Coordinates   1268538..1268987 (+) Length   149 a.a.
NCBI ID   WP_003154472.1    Uniprot ID   A7Z4C2
Organism   Bacillus amyloliquefaciens strain SH-B74     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1263538..1273987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOU34_RS06460 ctaE 1263656..1264279 (+) 624 WP_003154482.1 cytochrome c oxidase subunit III -
  DOU34_RS06465 ctaF 1264282..1264614 (+) 333 WP_007409686.1 cytochrome c oxidase subunit IVB -
  DOU34_RS06470 ctaG 1264639..1265523 (+) 885 WP_103715899.1 cytochrome c oxidase assembly factor CtaG -
  DOU34_RS06475 - 1265558..1265917 (-) 360 WP_007409688.1 YugN family protein -
  DOU34_RS06480 - 1266058..1266501 (+) 444 WP_039063034.1 CBS domain-containing protein -
  DOU34_RS06485 - 1266586..1267626 (+) 1041 WP_039063036.1 CAP domain-containing protein -
  DOU34_RS06490 - 1267802..1268212 (+) 411 WP_007409691.1 YlbD family protein -
  DOU34_RS06495 - 1268228..1268467 (+) 240 WP_039063037.1 YlbE-like family protein -
  DOU34_RS06500 ylbF 1268538..1268987 (+) 450 WP_003154472.1 YlbF family regulator Regulator
  DOU34_RS06505 - 1269046..1269318 (+) 273 WP_003154470.1 YlbG family protein -
  DOU34_RS06510 - 1269409..1269618 (+) 210 WP_007409692.1 hypothetical protein -
  DOU34_RS06515 rsmD 1269618..1270172 (+) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  DOU34_RS06520 coaD 1270177..1270659 (+) 483 WP_007409694.1 pantetheine-phosphate adenylyltransferase -
  DOU34_RS06525 ylbJ 1270678..1271904 (-) 1227 WP_039063039.1 sporulation integral membrane protein YlbJ -
  DOU34_RS06530 - 1272080..1272859 (+) 780 WP_014304961.1 patatin family protein -
  DOU34_RS06535 sepM 1272865..1273887 (+) 1023 WP_007409697.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16777.86 Da        Isoelectric Point: 4.8089

>NTDB_id=258536 DOU34_RS06500 WP_003154472.1 1268538..1268987(+) (ylbF) [Bacillus amyloliquefaciens strain SH-B74]
MYATIESVKLQSEAEQLAGMILQSETAENYRDCYKRLREDEEAGRIIRSFMSVKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=258536 DOU34_RS06500 WP_003154472.1 1268538..1268987(+) (ylbF) [Bacillus amyloliquefaciens strain SH-B74]
ATGTATGCAACAATTGAGTCCGTCAAGCTTCAAAGTGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCGTGAAGATGAAGAGGCAGGGCGGATCATTCGTTCTTTTATGAGCGTTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATACCATCCTGATTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAACTGGATTTAAACGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTGCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGGTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

87.919

100

0.879