Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CW734_RS01675 Genome accession   NZ_CP025135
Coordinates   101480..102862 (+) Length   460 a.a.
NCBI ID   WP_058382198.1    Uniprot ID   A0A0U2Q965
Organism   Planococcus sp. MB-3u-03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 96480..107862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CW734_RS01650 (CW734_01650) - 96498..96743 (+) 246 WP_101189173.1 hypothetical protein -
  CW734_RS01655 (CW734_01655) - 96883..97368 (+) 486 WP_101189174.1 CtsR family transcriptional regulator -
  CW734_RS01660 (CW734_01660) - 97365..97898 (+) 534 WP_101189175.1 UvrB/UvrC motif-containing protein -
  CW734_RS01665 (CW734_01665) - 97888..98979 (+) 1092 WP_101189176.1 protein arginine kinase -
  CW734_RS01670 (CW734_01670) - 98976..101420 (+) 2445 WP_101189177.1 ATP-dependent Clp protease ATP-binding subunit -
  CW734_RS01675 (CW734_01675) radA 101480..102862 (+) 1383 WP_058382198.1 DNA repair protein RadA Machinery gene
  CW734_RS01680 (CW734_01680) - 102966..104066 (+) 1101 WP_101189178.1 PIN/TRAM domain-containing protein -
  CW734_RS01685 (CW734_01685) ispD 104079..104768 (+) 690 WP_101189179.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  CW734_RS01690 (CW734_01690) ispF 104771..105271 (+) 501 WP_058382195.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  CW734_RS01695 (CW734_01695) gltX 105314..106777 (+) 1464 WP_101189180.1 glutamate--tRNA ligase -
  CW734_RS01700 (CW734_01700) cysE 107087..107761 (+) 675 WP_101189181.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 50240.03 Da        Isoelectric Point: 6.9059

>NTDB_id=258527 CW734_RS01675 WP_058382198.1 101480..102862(+) (radA) [Planococcus sp. MB-3u-03]
MAKKKIKFICQSCGYESAKWMGKCPGCAAWNTMTEETEVAAPKGTRGAFQHSAPQIAQKATPINSIETKEEPRTKTEMEE
LNRVLGGGIVSGSLVLIGGDPGIGKSTLLLQVSALLAKAGKKVLYISGEESIRQTKMRAERLDAVSGDLLIFAETNLELI
HHTIEEVEPDFVIVDSIQTVYHPEVTSAPGSVTQVRESTAELMRVAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLY
FEGERHHTYRILRSVKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSSGTAGSTVVASMEGTRPILVEIQALVTPSS
FNYPKRMATGIDQNRVSLLMAVLEKRVGLMLQSQDAYIKVAGGVKLDEPAIDLAVLASIVSSFRDIAPKVDDCIIGEVGL
TGEVRRVSRIEQRVQEAAKLGFKRAIIPKSNMGGWDFPEGIRVVGVETINEALKELFPQQ

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=258527 CW734_RS01675 WP_058382198.1 101480..102862(+) (radA) [Planococcus sp. MB-3u-03]
ATGGCGAAGAAGAAAATAAAGTTCATCTGCCAATCCTGCGGTTATGAGTCTGCAAAATGGATGGGGAAATGCCCAGGTTG
TGCGGCATGGAATACGATGACAGAAGAAACGGAAGTTGCAGCACCGAAAGGCACAAGGGGGGCATTCCAGCATAGCGCAC
CGCAAATTGCCCAAAAAGCGACACCGATCAATTCGATTGAAACGAAAGAAGAGCCAAGGACGAAAACGGAAATGGAAGAA
TTGAACCGCGTTCTCGGCGGCGGGATTGTTTCCGGTTCGCTTGTTTTGATTGGGGGCGACCCAGGCATCGGGAAATCGAC
TTTGCTCTTGCAAGTATCGGCGCTTCTTGCGAAAGCTGGCAAGAAAGTGTTGTATATTTCAGGTGAGGAATCGATTCGCC
AAACGAAAATGCGGGCAGAGCGGCTGGATGCGGTTTCGGGAGACTTGTTGATTTTTGCGGAAACCAATTTGGAGCTGATC
CATCATACGATTGAGGAAGTAGAGCCGGATTTCGTTATTGTCGATTCAATTCAGACGGTTTATCATCCGGAAGTGACGTC
TGCGCCCGGCAGCGTGACACAAGTGCGTGAAAGCACGGCGGAATTGATGCGGGTGGCGAAAACAAAGAACATCGCAATTT
TCCTGGTCGGCCACGTGACGAAAGAAGGCCAGATTGCCGGACCTCGTATTTTGGAACATATGGTGGATACAGTGCTGTAT
TTTGAAGGAGAACGGCATCATACGTACCGCATTTTGCGCAGTGTTAAAAACCGCTTCGGTTCGACGAATGAAATTGCGAT
TTTCGAAATGCTACAAGGTGGTTTAAAGGAAGTATTGAATCCATCCGAGCTGTTTTTACAGGAACGTTCAAGCGGCACAG
CAGGATCGACGGTTGTCGCTTCCATGGAAGGGACACGGCCGATACTGGTGGAAATCCAGGCGCTGGTGACGCCGTCGAGT
TTTAATTATCCGAAGCGGATGGCGACAGGGATTGACCAGAACCGGGTATCGTTATTGATGGCGGTGCTTGAGAAGCGCGT
CGGCTTGATGCTGCAGTCGCAAGATGCATACATTAAAGTGGCAGGCGGCGTGAAGCTGGATGAACCCGCGATCGATCTTG
CCGTGCTCGCAAGCATTGTTTCGAGTTTCCGGGATATTGCACCGAAAGTGGATGATTGCATTATCGGTGAAGTCGGGTTG
ACCGGAGAGGTGCGCCGTGTGTCGCGCATCGAACAGCGCGTGCAGGAAGCGGCAAAGCTGGGCTTTAAGCGTGCCATCAT
CCCGAAATCGAATATGGGAGGTTGGGATTTTCCGGAAGGAATCCGCGTCGTTGGTGTTGAAACTATAAACGAGGCGCTGA
AGGAATTATTCCCGCAACAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(356-431)

AAA domain (AAA_25)

(74-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U2Q965

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

72.467

98.696

0.715
  radA Streptococcus pneumoniae Rx1

61.656

99.783

0.615
  radA Streptococcus pneumoniae D39

61.656

99.783

0.615
  radA Streptococcus pneumoniae R6

61.656

99.783

0.615
  radA Streptococcus pneumoniae TIGR4

61.656

99.783

0.615
  radA Streptococcus mitis NCTC 12261

61.656

99.783

0.615
  radA Streptococcus mitis SK321

61.656

99.783

0.615

Multiple sequence alignment