Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   CU648_RS21335 Genome accession   NZ_CP025122
Coordinates   3938257..3938580 (-) Length   107 a.a.
NCBI ID   WP_000578878.1    Uniprot ID   A0A6L7H7A6
Organism   Bacillus sp. HBCD-sjtu     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3933257..3943580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU648_RS21310 (CU648_21310) - 3933498..3934784 (+) 1287 WP_000245999.1 D-alanyl-D-alanine carboxypeptidase family protein -
  CU648_RS21315 (CU648_21315) sipW 3934979..3935548 (+) 570 WP_000767813.1 signal peptidase I SipW -
  CU648_RS21320 (CU648_21320) - 3935609..3936196 (+) 588 WP_000172840.1 CalY family protein -
  CU648_RS21325 (CU648_21325) - 3936358..3937164 (+) 807 WP_101195537.1 DUF4047 domain-containing protein -
  CU648_RS21330 (CU648_21330) calY 3937589..3938182 (+) 594 WP_017560861.1 biofilm matrix protein CalY -
  CU648_RS21335 (CU648_21335) sinR 3938257..3938580 (-) 324 WP_000578878.1 helix-turn-helix domain-containing protein Regulator
  CU648_RS21340 (CU648_21340) - 3938660..3938794 (-) 135 WP_000276214.1 anti-repressor SinI family protein -
  CU648_RS21345 (CU648_21345) inhA1 3939138..3941525 (+) 2388 WP_001035924.1 M6 family metalloprotease immune inhibitor InhA1 -
  CU648_RS21350 (CU648_21350) - 3941697..3943064 (+) 1368 WP_000116799.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12319.17 Da        Isoelectric Point: 9.6244

>NTDB_id=258517 CU648_RS21335 WP_000578878.1 3938257..3938580(-) (sinR) [Bacillus sp. HBCD-sjtu]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=258517 CU648_RS21335 WP_000578878.1 3938257..3938580(-) (sinR) [Bacillus sp. HBCD-sjtu]
ATGATTGGAGAACGTATAAAACGCCTTCGCTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAGCTAACCTAGACTCCGAATGGACACAGCTCGTC
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L7H7A6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment