Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DOU34_RS02550 Genome accession   NZ_CP030097
Coordinates   511626..512342 (+) Length   238 a.a.
NCBI ID   WP_007408499.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SH-B74     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 506626..517342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOU34_RS02520 - 506806..507183 (+) 378 WP_007610033.1 DUF1992 domain-containing protein -
  DOU34_RS02525 - 507193..507624 (-) 432 WP_038457280.1 Hsp20/alpha crystallin family protein -
  DOU34_RS02530 - 507640..507882 (-) 243 WP_003155595.1 spore germination protein -
  DOU34_RS02535 - 507897..508157 (-) 261 WP_014417185.1 spore germination protein -
  DOU34_RS02540 treP 508428..509843 (+) 1416 WP_020955500.1 PTS system trehalose-specific EIIBC component -
  DOU34_RS02545 treC 509919..511604 (+) 1686 WP_007408498.1 alpha,alpha-phosphotrehalase -
  DOU34_RS02550 treR 511626..512342 (+) 717 WP_007408499.1 trehalose operon repressor Regulator
  DOU34_RS02555 - 512475..513140 (+) 666 WP_003155588.1 NAD(P)H-dependent oxidoreductase -
  DOU34_RS02560 - 513176..513937 (-) 762 WP_007408500.1 YibE/F family protein -
  DOU34_RS02565 - 513934..515073 (-) 1140 WP_007408501.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27484.45 Da        Isoelectric Point: 6.9758

>NTDB_id=258504 DOU34_RS02550 WP_007408499.1 511626..512342(+) (treR) [Bacillus amyloliquefaciens strain SH-B74]
MKVNKYITIYKDMVRQIESGQRQAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTTVHRLGLILPPSEAAKELGTEADEKVWEVVRSRRIDGEHIILDKDYFVKKHVPLLTKAICEDS
IYEYLEGELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLEDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=258504 DOU34_RS02550 WP_007408499.1 511626..512342(+) (treR) [Bacillus amyloliquefaciens strain SH-B74]
ATGAAAGTGAATAAATACATCACAATCTATAAAGATATGGTGCGGCAGATCGAAAGCGGCCAGCGGCAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTGTGCGATCAATACGGCACATCACGAGAAACCGTCCGCAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGTTTTCCCGTCTCAGGC
CTGATCAGCTTCAAAGAGCTTTCGGAAACGCTCGGAAAAGAGACGAGAACGACGGTTCACCGTCTCGGGCTGATCCTGCC
TCCCTCAGAAGCCGCAAAAGAGCTTGGTACAGAAGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACATATTATTTTGGACAAGGATTACTTTGTGAAAAAACATGTGCCTCTATTGACGAAGGCGATTTGTGAAGATTCG
ATCTATGAGTATCTCGAAGGAGAACTTGGCCTCTCCATCAGCTACGCGCAAAAGGAAATTGTCGTGGAGCCGGCGGGGGA
GGAGGACCGGAAGTATTTGGATCTAGGCGGGTTTAGCCATATGGCGGTCGTGAAAAACCGCGTCTTTTTGGAGGATACCA
GCCTCTTTCAGTACACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

43.22

99.16

0.429

Multiple sequence alignment