Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   CU648_RS14365 Genome accession   NZ_CP025122
Coordinates   2637940..2639067 (+) Length   375 a.a.
NCBI ID   WP_000470747.1    Uniprot ID   -
Organism   Bacillus sp. HBCD-sjtu     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2632940..2644067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU648_RS14335 (CU648_14335) spoIIIJ 2632986..2633753 (-) 768 WP_000727748.1 YidC family membrane integrase SpoIIIJ -
  CU648_RS14340 (CU648_14340) rnpA 2633793..2634152 (-) 360 WP_000726628.1 ribonuclease P protein component -
  CU648_RS14345 (CU648_14345) rpmH 2634229..2634363 (-) 135 WP_000831901.1 50S ribosomal protein L34 -
  CU648_RS14350 (CU648_14350) dnaA 2634929..2636269 (+) 1341 WP_000428021.1 chromosomal replication initiator protein DnaA -
  CU648_RS14355 (CU648_14355) dnaN 2636448..2637587 (+) 1140 WP_017561658.1 DNA polymerase III subunit beta -
  CU648_RS14360 (CU648_14360) yaaA 2637715..2637927 (+) 213 WP_000821367.1 S4 domain-containing protein YaaA -
  CU648_RS14365 (CU648_14365) recF 2637940..2639067 (+) 1128 WP_000470747.1 DNA replication/repair protein RecF Machinery gene
  CU648_RS14370 (CU648_14370) gyrB 2639106..2641028 (+) 1923 WP_000435986.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  CU648_RS14375 (CU648_14375) gyrA 2641117..2643588 (+) 2472 WP_001282856.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43362.67 Da        Isoelectric Point: 6.6001

>NTDB_id=258500 CU648_RS14365 WP_000470747.1 2637940..2639067(+) (recF) [Bacillus sp. HBCD-sjtu]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLLGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRE

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=258500 CU648_RS14365 WP_000470747.1 2637940..2639067(+) (recF) [Bacillus sp. HBCD-sjtu]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAGTTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAGAATGCGCAAGGGAAAACGAATTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAGCTTATCCGTTGGGATGAAGATTTCGGTCAAATTAAGGGAAAGTTACAAAAGAGAAATAGTTCT
TTGTCTTTGGAATTAAATATCTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAATTGAGTCAATA
TATTGGCGTAATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGCCAAATAGCTCCGGTCTATTTGTATGAATTGAGTCAATATCAAAAGGTGCTCACACAACGA
AATCACTTGCTGAAAAAGATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTGCAAAGATATTGCAAAAGCGTTTTGAATTTTTGCATTTATTACAAGAATGGGCAGCTCCAATTCATCGCGGTA
TAAGCCGTGGATTAGAAGAATTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTACTTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCACAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTACTCAGAAGTTAAGGAATATCCGATTCTTTTACTCGATGATGTATTATCA
GAATTAGATGATTATCGTCAATCACATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.133

0.653

Multiple sequence alignment