Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   DOU34_RS00810 Genome accession   NZ_CP030097
Coordinates   183611..184045 (+) Length   144 a.a.
NCBI ID   WP_003156263.1    Uniprot ID   A0A9P1JEY0
Organism   Bacillus amyloliquefaciens strain SH-B74     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 178611..189045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOU34_RS00780 - 179283..180143 (+) 861 WP_061047184.1 SDR family oxidoreductase -
  DOU34_RS00785 - 180156..180659 (+) 504 WP_025284250.1 D-lyxose/D-mannose family sugar isomerase -
  DOU34_RS00790 - 180747..181370 (+) 624 WP_039252743.1 GNAT family protein -
  DOU34_RS00795 - 181377..181799 (+) 423 WP_003156270.1 pyridoxamine 5'-phosphate oxidase family protein -
  DOU34_RS00800 - 182298..183107 (+) 810 WP_039252740.1 lipid II flippase Amj family protein -
  DOU34_RS00805 - 183145..183435 (-) 291 WP_003156265.1 DUF3817 domain-containing protein -
  DOU34_RS00810 lrpC 183611..184045 (+) 435 WP_003156263.1 Lrp/AsnC family transcriptional regulator Machinery gene
  DOU34_RS00815 - 184109..186295 (+) 2187 WP_061047207.1 DNA topoisomerase III -
  DOU34_RS00820 - 186529..187614 (+) 1086 WP_061047185.1 hypothetical protein -
  DOU34_RS00825 - 187595..188443 (+) 849 WP_061047186.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16474.10 Da        Isoelectric Point: 8.6776

>NTDB_id=258500 DOU34_RS00810 WP_003156263.1 183611..184045(+) (lrpC) [Bacillus amyloliquefaciens strain SH-B74]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKINADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=258500 DOU34_RS00810 WP_003156263.1 183611..184045(+) (lrpC) [Bacillus amyloliquefaciens strain SH-B74]
ATGAAACTAGATAATGTTGATCTGAGCATCATTAAAGAGCTGCAGCGGGACAGCCGCCTGTCCATGCGGGAGCTTGGCAG
AAAAATCAAATTGTCAGCCCCGTCCGTCACAGAGCGTGTCAGACAGCTTGAATCTTTCGGCGTTATTAAGCGCTATACAT
TGGACATTGATCAAAAAAAGATCGGGCTTCCCGTCTCCTGCATTGTTGAAGCGACAGTGAAAAACGGAAAATACGATCAA
TTCAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGTTTTCGGGTCGCCGGGGCGGCGTGTTATATGCTGAAGAT
TAACGCGGACAGCCTGGAAACAATCGAACACTTCATTAACCGCACCTCTCCGTATGCCCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JEY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

81.56

97.917

0.799

Multiple sequence alignment